Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe06g1960 ATGGAAGAGGTTGAAGAAGCTAACAGAGCAGCCATAGAGAGCTGCCATGGAGTTTTGAATCTTTTGGCTCAATCTCCTCAAGTTCAACAAGACCAACTTCATTTGAGGAATTTAATGGTGCAAACTGGAGAAGCTGTTTTTAAATTCAAGAAAGTGCTTTCTCTTTTGAATTCTGGTTTTGGTCATGCAAGAGTTAGAAGAAGTTTCAACAACAAGATTCCTCCTCTCCCTTTGCCCCAAAAATCCATCTTGGATTCCCCAAATTTCACACCAGATCCTCCAAACAAAAAAAATCTTCACCCTTTTCAGCCTGGTTTGAATTTGAATGGTAAAGTTTCTATTTTTTTGGGAAACCCAGATTTGGAATTGGGTCAAATTGACAAAAACTCCCTCCAAATTCCCAAACAATCTCCATCTTTAAACTTCACCTTCCCTCAACAACAACAACAACAACAACAGAGGATGTTGGCTCATCAGAAACAGATGAAACAGCAAGCAGAGATGATGTTTCTTAGGAGTAACAACAATGGGATGAATCTGAATTTTGACAACTCTAATTGCACATTGACAATGTCATCAGCTAGATCTTTCATTTCCTCATTGAGTATGGATGGGAGCGTCGCCGACGGGAGCTCGTTCCATTTGCTCGGACCCGCGTCGACGTCGGTCGACAACAAGAGGAAGTTTTCAGAGGGGAGCTTGAAATGTGGAAGCACTGGTAAATGTCATTGCTCAAAGAAGAGGAAACATAGAGTGAAGAGATCAATCAAAGTGCCTGCCATCAGTAACAAACTTGCAGATATCCCTTCTGATGATTATTCATGGAGGAAATATGGGCAGAAGCCAATTAAGGGTTCTCCTCATCCTCGGGGTTACTACAAATGCAGCAGCATGAGAGGTTGTCCAGCGAGAAAGCACGTCGAGCGGTGCTTAGAAGAGCCAACGATGCTTATTGTAACGTACGAAGGAGAACACAATCACCCGAAAATGTCGATTCAATCTGCACACACTTAG 1014 42.21 MEEVEEANRAAIESCHGVLNLLAQSPQVQQDQLHLRNLMVQTGEAVFKFKKVLSLLNSGFGHARVRRSFNNKIPPLPLPQKSILDSPNFTPDPPNKKNLHPFQPGLNLNGKVSIFLGNPDLELGQIDKNSLQIPKQSPSLNFTFPQQQQQQQQRMLAHQKQMKQQAEMMFLRSNNNGMNLNFDNSNCTLTMSSARSFISSLSMDGSVADGSSFHLLGPASTSVDNKRKFSEGSLKCGSTGKCHCSKKRKHRVKRSIKVPAISNKLADIPSDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIVTYEGEHNHPKMSIQSAHT 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 70850247 70852764 - Hsped.06g19600.1 Hepe06g1960 573335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe06g1960 337 Pfam WRKY DNA -binding domain 271 328 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe06g1960 337 SMART WRKY_cls 269 329 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe06g1960 337 ProSiteProfiles WRKY domain profile. 264 330 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe06g1960 337 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 1 333 IPR044810 GO:0003700(InterPro)
Hepe06g1960 337 FunFam WRKY transcription factor 65 253 330 - -
Hepe06g1960 337 SUPERFAMILY WRKY DNA-binding domain 267 329 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe06g1960 337 Gene3D WRKY domain 254 329 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe06g1960 337 Pfam Plant zinc cluster domain 230 267 IPR018872 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g1263 Hepe-Chr4:68169831 Hepe06g1960 Hepe-Chr6:70850247 5.87e-53 dispersed
Hepe06g1960 Hepe-Chr6:70850247 Hepe08g1152 Hepe-Chr8:11676588 1.48e-49 dispersed
Hepe03g2055 Hepe-Chr3:78089943 Hepe06g1960 Hepe-Chr6:70850247 1.91e-112 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55861 PF03106 WRKY 3.70E-26 CL0274 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe06g1960 - - - 0.0