Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe06g1964 ATGGCGAATCAGGTCGTTAAAGTGAAGAGGGAAAAAATTGCAGCATGCATAACTTGCCCTCTTTGCAATAAGCTCTTGAAAGAAGCCACCACCATTTCTGAATGCCTTCATACGTTTTGCAGAAAGTGCATATACGATAAAATTTCCGATGAAGAACTAGAAAGTTGTCCAGTATGTTACATCGACCTCGGGTGTGTACCGCTGGAGAAATTAAGGCCAGACCACAATCTAGAAGATTTAAGGGCCAAGATTTTCCCTAGTAAAAGGAGAAAAGTGGAGACGCCCGAAGTTGCTCCTGTAATACTACCACCAGTTAGAAGAAAGGAAAGATCTCTTTCCTCATTGGTGGTCAATAGTCCCAGAGTGTCCAGTCATGCTACGACAACTGGAAGAAGAACAGCAGCAGCTGCTGCAAGAATTGCGTTACGAACACCAAGAGTCTCCTCTGAGAAGCGTGTGAAGAAAGAGGAGGATTCCGGGGAAGACCATTCAGAGAGCTCAAGTTCCCTCGAGACATCAGAAAAATTCAATCAGAACAAAAGGCCGGATTCCAGTCCTACCAAGTCTACCATATCTTTGCGAAAGAAAGAAGTTGAAAATGGTGTTGATTCACTGGGAGGGAACTTGGATATCTGGAAACCACTAAATTACTTGGTAGAAGTTGCAAATAGGAGTAAATGTTTCAAATCTAATTCACAAGGATTTGAGACTAAAGTCGAGCTTGCAGGAGTCGATGGAAGTGAAGCTCAGGCAAGCAAGTCTAGAAATAGGGAAAGAAAACGCAAGCAAAAACGTGAGAACGGAAAAACTAGAACAGACCCGGTATCTCCAGAAACTGAAAAACCTAAGAAACTGCGTAAGGTACGCCAGAAGAGGGAACCTTTGTATGGGGACTCCAGCATTACACCCCAGGTTGTGTTGGATGGCACTAGTGCTCGGCTTGAAAGAAGAGCTGGTCCAATTTGGCTTTCACTCATAGCTTCTGATCAGGAAGGAGATGTATCGTTGCCGCAAATTCCTGCTAGGTATTTGAGAATAAAGGATGGAAACTTGCCAGTATCATTTGTTCAGAAGTACCTTATGAGAAAGTTGGATCTCTCCAGTGAATCAGAGGTTGAAGTCAAGTGTATGGGACATCCAGTTGTGCCCACACTGGATTTGCATAGTTTAGTTGATTTGTGGCTACAAACAGCATCAACCTCCGAAAAGATTCCGGCATCGATCGGGACGTCCGCGGAGGATTTCATTATGGTTCTTTACTATGCTAGAAAGATCATAGTTTCTTGA 1287 43.59 MANQVVKVKREKIAACITCPLCNKLLKEATTISECLHTFCRKCIYDKISDEELESCPVCYIDLGCVPLEKLRPDHNLEDLRAKIFPSKRRKVETPEVAPVILPPVRRKERSLSSLVVNSPRVSSHATTTGRRTAAAAARIALRTPRVSSEKRVKKEEDSGEDHSESSSSLETSEKFNQNKRPDSSPTKSTISLRKKEVENGVDSLGGNLDIWKPLNYLVEVANRSKCFKSNSQGFETKVELAGVDGSEAQASKSRNRERKRKQKRENGKTRTDPVSPETEKPKKLRKVRQKREPLYGDSSITPQVVLDGTSARLERRAGPIWLSLIASDQEGDVSLPQIPARYLRIKDGNLPVSFVQKYLMRKLDLSSESEVEVKCMGHPVVPTLDLHSLVDLWLQTASTSEKIPASIGTSAEDFIMVLYYARKIIVS 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 70877358 70881891 - Hsped.06g19640.1 Hepe06g1964 573339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe06g1964 428 CDD RING-HC_PCGF 17 59 - -
Hepe06g1964 428 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 4 424 IPR044807 GO:0004842(InterPro)
Hepe06g1964 428 MobiDBLite consensus disorder prediction 145 169 - -
Hepe06g1964 428 Pfam Zinc finger, C3HC4 type (RING finger) 19 59 - -
Hepe06g1964 428 Gene3D - 305 408 - -
Hepe06g1964 428 SUPERFAMILY RING/U-box 15 84 - -
Hepe06g1964 428 MobiDBLite consensus disorder prediction 246 294 - -
Hepe06g1964 428 MobiDBLite consensus disorder prediction 170 189 - -
Hepe06g1964 428 MobiDBLite consensus disorder prediction 116 131 - -
Hepe06g1964 428 MobiDBLite consensus disorder prediction 116 195 - -
Hepe06g1964 428 ProSiteProfiles Zinc finger RING-type profile. 19 59 IPR001841 -
Hepe06g1964 428 MobiDBLite consensus disorder prediction 267 284 - -
Hepe06g1964 428 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 109 IPR013083 -
Hepe06g1964 428 SMART ring_2 19 59 IPR001841 -
Hepe06g1964 428 ProSitePatterns Zinc finger RING-type signature. 35 44 IPR017907 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe05g1081 Hepe-Chr5:52351189 Hepe06g1964 Hepe-Chr6:70877358 6.86e-13 dispersed
Hepe05g1611 Hepe-Chr5:65858652 Hepe06g1964 Hepe-Chr6:70877358 6.21e-75 wgd
Hepe06g1964 Hepe-Chr6:70877358 Hepe08g2437 Hepe-Chr8:65157733 6.15e-134 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe06g1964 K16277 - csv:101220692 698.738