Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe06g1965 ATGGGTGGAGATAGATTTGTAATTCCGGTGGAATCTCAGGCGGTTTCAGTGAAGAAGAAGAAGAAGAAGACGACGACTAAGACGAAGAAGAATACTGCAATTTCCAGAAGCTGGGTTTCGTTGGACCATGAAGGAAGGAGTAGGATTTTGGATGTGGATAAGTTTGCGATTATGCAAAGGGTTCAGATTAATGCCAGAGATCTTCGCCTTCTTGATCCTCTCTTGTCCTATCCTTCCACTATTTTGGGCAGAGAAAGAGTGATTGTTCTCAATTTGGAGCACATCAAGTCAATTATCACTGCCGATGAGGTTCTGCTAAGAGATCCAATGGATGAAAATGTAGTTCCAATTGTTGAAGAACTGCAGAGACGGTTGCCTTCCACAAGCTCCATTTACCAAGGACAAGGTGAAGAAGAAGAGCCTTCTACCGCCCAAAATGAGTTGGCTGAAAACGAATTTCCATTTGAATTCCGCGCCTTAGAGGTCGCACTAGAAGCAATTTGTAGTTTTCTTGATGCACGCACAAGAGATCTAGAGACTGAGACGTATCCTGCTTTAGATGAGCTGACCTCCAAGATTAGCAGTCGTAACTTGGACCGAGTGCGTAAACTGAAGAGTGCAATGACAAGGTTGACAATCCGGGTGCAAAAGGTTAGGGATGAACTTGAACAACTTCTGGACGATGACGATGACATGGCAGAACTTTACTTGTCGCGAAAAGTAGCTGGCACCCCTGAAAGTGGCTTTGGGACTCCAAATTGGTTTCTTGCTTCTCCGAAGGACTATTCAAAGATGTCTAAAACAAGTAGAGCAAGTGGGATTACGTTTCGAGGAGAGAGTGATGTTGAGGAACTAGAAATGCTACTCGAGGCTTATTTTATGCAAATTGAAGGTACACTAAACAAACTAATCACGTTGCGGGAGTATATTGATGACACAGAGGATTACATCAATATTCAGCTTGACAACCATAGGAATCAACTTATTCAGGTACTCTTTTTAAAGCCTAATAAAATTTAA 1020 42.45 MGGDRFVIPVESQAVSVKKKKKKTTTKTKKNTAISRSWVSLDHEGRSRILDVDKFAIMQRVQINARDLRLLDPLLSYPSTILGRERVIVLNLEHIKSIITADEVLLRDPMDENVVPIVEELQRRLPSTSSIYQGQGEEEEPSTAQNELAENEFPFEFRALEVALEAICSFLDARTRDLETETYPALDELTSKISSRNLDRVRKLKSAMTRLTIRVQKVRDELEQLLDDDDDMAELYLSRKVAGTPESGFGTPNWFLASPKDYSKMSKTSRASGITFRGESDVEELEMLLEAYFMQIEGTLNKLITLREYIDDTEDYINIQLDNHRNQLIQVLFLKPNKI 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 70884018 70889065 - Hsped.06g19650.1 Hepe06g1965 573340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe06g1965 339 Gene3D Magnesium transport protein CorA, transmembrane region 112 328 - -
Hepe06g1965 339 Pfam Magnesium transporter MRS2-like 261 325 - -
Hepe06g1965 339 Pfam Magnesium transporter MRS2-like 50 242 - -
Hepe06g1965 339 CDD Mrs2_Mfm1p-like 38 330 IPR039204 -
Hepe06g1965 339 FunFam Magnesium transporter MRS2-1 26 109 - -
Hepe06g1965 339 Coils Coil 201 228 - -
Hepe06g1965 339 Gene3D - 19 109 - -
Hepe06g1965 339 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 19 331 IPR039204 GO:0015095(PANTHER)|GO:0015693(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe06g1965 Hepe-Chr6:70884018 Hepe07g0517 Hepe-Chr7:5459026 8.96e-82 dispersed
Hepe03g0248 Hepe-Chr3:3170359 Hepe06g1965 Hepe-Chr6:70884018 1.21e-145 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe06g1965 K16075 - csv:101220452 559.681