Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe07g0046 ATGGGGAAGGCGGTGGTTTATGTCGTTATAGCCACCGCCGCCACCGTCTTCTTCTTATTTTCGCCGTCGAATCTCCACGATCGGAACCGTCAAGATCTAACTCGTCGCCTTGGTTACAAATTCCGAACCCCGGCGTTCGATCCTCTCGTTGCAGAAATGGAAAGAATCGAAGAAGAACATGAATCGGAAAATCAAATTCCCGATACTTACAGAGATTTCTACGACGAAGGGAGATTGAACATTACGTTGAGGCTGCTCGTGCTGTTTCCTTTGCTGGATCACTCGCCGAAAGATGGAACAATCTGTTACGAGGAGCTGAGCGATTGGATCACAGGGCAAGCTATTGAGAGATTGAATTACACAACGAGGAAACAATTGGCGTTCTATGACAAGAATGGAGATTCCGCCATTTCTTTCCACGAGTATCTGCCGCAGTTTACAGACGAAGATATTGCTAGAAATGAAACGGAGCATGGAGAAGCTGGATGGTGGAAAAAGCAATTCACAAATGCAGATGTGGACTCAAATGGATTATTAAACTTTGATGAACTGAAAGATTTCCTGCACCCTCAAGATAGCAGCAATTACCGAATACAAAATTGGCTCTTGAGAGAGAAAATGAAGCGCATGGACAATGACAGAGATGGAAAACTCAACTTTGAGGAATTTCTCCACCATGCATATGAAATATACAAGAGCTATATCGAATTCGAAACTCGAGGGGACGATGTACCGACCGCTGAAGAGAAGTTCGACGAGCTTGATCTTGATGAGGACGAAGTATTGACTGTGGAAGAATTAAGGCCATTGTTCCACTATCTTCATCCTGGAGATCTGTCTTATTCCCAACATTACACAAGTCATTTGATTAATGAGGCTGATGATAACAAAGATGGCTACTTAACACTTGATGAGATGCTTAATCATGAGGATGTTTTCTACAGCACAGTATATGAAAATCAAGATGGCGACTATGATGACGATAACCATGATGAACTTTGA 1002 42.91 MGKAVVYVVIATAATVFFLFSPSNLHDRNRQDLTRRLGYKFRTPAFDPLVAEMERIEEEHESENQIPDTYRDFYDEGRLNITLRLLVLFPLLDHSPKDGTICYEELSDWITGQAIERLNYTTRKQLAFYDKNGDSAISFHEYLPQFTDEDIARNETEHGEAGWWKKQFTNADVDSNGLLNFDELKDFLHPQDSSNYRIQNWLLREKMKRMDNDRDGKLNFEEFLHHAYEIYKSYIEFETRGDDVPTAEEKFDELDLDEDEVLTVEELRPLFHYLHPGDLSYSQHYTSHLINEADDNKDGYLTLDEMLNHEDVFYSTVYENQDGDYDDDNHDEL 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 491122 493648 + Hsped.07g00460.1 Hepe07g0046 573441

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe07g0046 333 ProSiteProfiles EF-hand calcium-binding domain profile. 203 233 IPR002048 GO:0005509(InterPro)
Hepe07g0046 333 ProSitePatterns EF-hand calcium-binding domain. 294 306 IPR018247 -
Hepe07g0046 333 ProSiteProfiles EF-hand calcium-binding domain profile. 159 194 IPR002048 GO:0005509(InterPro)
Hepe07g0046 333 ProSitePatterns EF-hand calcium-binding domain. 211 223 IPR018247 -
Hepe07g0046 333 ProSitePatterns EF-hand calcium-binding domain. 172 184 IPR018247 -
Hepe07g0046 333 Gene3D - 49 229 - -
Hepe07g0046 333 SUPERFAMILY EF-hand 84 145 IPR011992 -
Hepe07g0046 333 SMART efh_1 202 230 IPR002048 GO:0005509(InterPro)
Hepe07g0046 333 SMART efh_1 163 191 IPR002048 GO:0005509(InterPro)
Hepe07g0046 333 SMART efh_1 285 313 IPR002048 GO:0005509(InterPro)
Hepe07g0046 333 SMART efh_1 121 149 IPR002048 GO:0005509(InterPro)
Hepe07g0046 333 SMART efh_1 246 274 IPR002048 GO:0005509(InterPro)
Hepe07g0046 333 ProSiteProfiles EF-hand calcium-binding domain profile. 242 277 IPR002048 GO:0005509(InterPro)
Hepe07g0046 333 Gene3D - 230 312 - -
Hepe07g0046 333 SUPERFAMILY EF-hand 160 324 IPR011992 -
Hepe07g0046 333 Pfam EF-hand domain pair 164 226 IPR002048 GO:0005509(InterPro)
Hepe07g0046 333 Pfam EF-hand domain pair 248 308 IPR002048 GO:0005509(InterPro)
Hepe07g0046 333 PANTHER RETICULOCALBIN 54 333 - GO:0005509(PANTHER)|GO:0005783(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe07g0046 K23901 - - csv:101207354 501.13
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe07g0046 Hepe-Chr7:491122 Hepe02g2463 Hepe-Chr2:71046209 2.46e-55 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1018 . Blo15g00083 . . . Bpe07g01020 . . . . . . . . Sed07g2373 . . Bhi01g01509 Tan01g0073 Cmetu06g2632 . Hepe07g0046 Mch10g0046 . . . . . . . . Cone1ag0997 . . . . . . Cme06g01158 . . . . . . . Bma12g01216 . . . . . . Car18g01232 . . . . . . . . . Cla05g00982 Cam05g1073 Cec05g1080 Cco05g1072 Clacu05g1067 Cmu05g1018 Cre05g1092 . Csa03g01971 Chy06g01184 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012485 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29