Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe07g0050 ATGGACAAGTCTAGATCTAAGAGAAACTACTACTATGACCACCAAGACTATGATTCCGAGCCGATGGGTAGAACCAGACCTCGTTACAACAACAATCACTACCCCAATAATAACTATCGTCACCGTGGGAGTGCTGTTCGACCCTCTAAACCTCAAGACCAATCTCTTATGATCACCACCACTTACAGGATACTCTGTCACGACGCCAAGGCCGGCGGTGTTATCGGCAAATCTGGTAGTATCATTAAGTCCATAAGGCAACACACCGGCGCCTGGATCAACGTGCATGAGCTTGTTTCCGGCGATGAGGAGAGGATAATTGAGATATCCGACACTCGGCGGAGGGACCCGGAAGGCCGGATGCCGTCCTTCTCTCCGGCCCAGGAAGCGCTTTTCTTGATTCATGAAAGGATTCTCGAGAGTGAAATGAGTCCTGGGTTTAATGGAATGGGGTATGGTGCTGAGGATGAGGATGATGATTACGGCGGGGTTAGAGGTGGAGCTGGTGGTGGTATTCGTGTGGCAACAAGGCTTGTCGTGTCTAGAATGCACGTAGGTTGTTTGCTTGGGAAGGGAGGGAAGATAATCGAGCAAATGAGGATGGAAACCAAGACCCAGATAAGGATTTTACCTAGAGATCACAATTTGCCTCGTTGCATTTCAATGTCGGAGGAGATTGTTCAGATTGTTGGAGATGCAAATGCTGTAAAGAAAGCTATAGCTATCGTTTCATCACGCTTGCGAGAGAGTCAGCATCGTGACCGTAGTCATTTCCATGGGCGTCAACATTCACCTGAACGTATTTTCCCTCCCGATGATGATTATGTTCCACATACCGCACGACGATTATCAATGGATGGACGGCCATTTAGACCACGCATATCTGCTTCTAACACAAGAGGCAATGACTATTCCAACCGTCAATCTAGTTTTTCAATGGAGCCTGGGGCTGCTCCTGTTAATGACAATATGGTGTCCTTTTTCGGTGACGACCTTGTATTTAGAATATTATGCCCAATTGATAAAGTTGATAGTGTTATTGGAGAGTCTGATGGAATCGTAGAATTACTTCGGAATGAAGTTGGTGTGGATATCAAGGTTTCCGACCCTGTGACTGGTTCAAATGAACAGATTCTTATCATTTCCTCGGATGAGGGTCCAGATGATGAGCTTTTTCCAGCACAGGAAGCTTTGTTACACATCCAAACTCGCATTGTTGATCTTGTTCCTGACAAGGATAATATTGTAACTACTAGGTTACTTGTCCCTTCAAGTGAAATTGGATGTTTGGAGGGAAGAGATGGGTCGTTGTTAGAGATGAAGAGATTAACTGGTGCAAATGTACAAATTGTGCCAAGAGAAGAGCTTCCCTTGTTTGTATCAGGGGCTGATGAGCTCGTACAGATCATAGGGGACATAAAAGCAGCTCGAGATGCACTCGTTGAGTTAACATCAAGATTACGGAATTACCTTTATAAGGAGCCCTTCCAAAGAGATGCAAGTCCTACAATCTCAGTACCAAGCACCATTGTCAGTTTTGGACACGAGGAATCATTTTCAAATAATAATGCTTCAGCTCGTGAAGTTCATAGTGGAAATGATTCTGCTAGCACAGCCTATCAAAATGTGCAACCTTTTGGAACAGCACAGCTTCTAAAGGAAACTGGAGGGTCGAGCAATGAAACCGGTACGCGGAATGAAAATGACCGACGTGAAGATTTGCCTAGTACATTAAATAGGATCCCTGTGCCGCTTGTCACTCGGAGTACACTTGAAGTTGTGATACCCGAGCCTGCAATTCCTAAGCTTATAACAAAATCAAAAAACATGCTTGCTCAGATCAGCGAGTTGTCCGGAGCCAATGTTACATTGGTAGAAGATAGACCAGATGTAACCCAGAAGATAATTCAAATATCAGGTACACCAGAGCAGGCTGAGAGAGCCCAGAGCTTGTTGCAAGGCTTTATTTTGAGCATGCAAGAAGATGGGCCATAA 1995 45.01 MDKSRSKRNYYYDHQDYDSEPMGRTRPRYNNNHYPNNNYRHRGSAVRPSKPQDQSLMITTTYRILCHDAKAGGVIGKSGSIIKSIRQHTGAWINVHELVSGDEERIIEISDTRRRDPEGRMPSFSPAQEALFLIHERILESEMSPGFNGMGYGAEDEDDDYGGVRGGAGGGIRVATRLVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHNLPRCISMSEEIVQIVGDANAVKKAIAIVSSRLRESQHRDRSHFHGRQHSPERIFPPDDDYVPHTARRLSMDGRPFRPRISASNTRGNDYSNRQSSFSMEPGAAPVNDNMVSFFGDDLVFRILCPIDKVDSVIGESDGIVELLRNEVGVDIKVSDPVTGSNEQILIISSDEGPDDELFPAQEALLHIQTRIVDLVPDKDNIVTTRLLVPSSEIGCLEGRDGSLLEMKRLTGANVQIVPREELPLFVSGADELVQIIGDIKAARDALVELTSRLRNYLYKEPFQRDASPTISVPSTIVSFGHEESFSNNNASAREVHSGNDSASTAYQNVQPFGTAQLLKETGGSSNETGTRNENDRREDLPSTLNRIPVPLVTRSTLEVVIPEPAIPKLITKSKNMLAQISELSGANVTLVEDRPDVTQKIIQISGTPEQAERAQSLLQGFILSMQEDGP 664
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 505566 511118 - Hsped.07g00500.1 Hepe07g0050 573445

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe07g0050 664 MobiDBLite consensus disorder prediction 295 315 - -
Hepe07g0050 664 CDD KH-I_PEPPER_rpt2_like 176 248 - -
Hepe07g0050 664 ProSiteProfiles Type-1 KH domain profile. 588 652 - -
Hepe07g0050 664 MobiDBLite consensus disorder prediction 251 288 - -
Hepe07g0050 664 ProSiteProfiles Type-1 KH domain profile. 59 131 - -
Hepe07g0050 664 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 52 112 IPR036612 GO:0003723(InterPro)
Hepe07g0050 664 MobiDBLite consensus disorder prediction 553 575 - -
Hepe07g0050 664 Gene3D K Homology domain, type 1 58 141 IPR036612 GO:0003723(InterPro)
Hepe07g0050 664 CDD KH-I_PEPPER_rpt1_like 331 399 - -
Hepe07g0050 664 ProSiteProfiles Type-1 KH domain profile. 173 243 - -
Hepe07g0050 664 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 323 384 IPR036612 GO:0003723(InterPro)
Hepe07g0050 664 SMART kh_6 587 657 IPR004087 GO:0003676(InterPro)
Hepe07g0050 664 SMART kh_6 330 403 IPR004087 GO:0003676(InterPro)
Hepe07g0050 664 SMART kh_6 414 488 IPR004087 GO:0003676(InterPro)
Hepe07g0050 664 SMART kh_6 172 248 IPR004087 GO:0003676(InterPro)
Hepe07g0050 664 SMART kh_6 58 139 IPR004087 GO:0003676(InterPro)
Hepe07g0050 664 Gene3D K Homology domain, type 1 171 252 IPR036612 GO:0003723(InterPro)
Hepe07g0050 664 MobiDBLite consensus disorder prediction 251 315 - -
Hepe07g0050 664 CDD KH-I_PEPPER_rpt1_like 59 132 - -
Hepe07g0050 664 MobiDBLite consensus disorder prediction 1 51 - -
Hepe07g0050 664 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 174 254 IPR036612 GO:0003723(InterPro)
Hepe07g0050 664 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 581 660 IPR036612 GO:0003723(InterPro)
Hepe07g0050 664 Gene3D K Homology domain, type 1 587 658 IPR036612 GO:0003723(InterPro)
Hepe07g0050 664 MobiDBLite consensus disorder prediction 25 51 - -
Hepe07g0050 664 Pfam KH domain 417 482 IPR004088 GO:0003723(InterPro)
Hepe07g0050 664 Pfam KH domain 61 110 IPR004088 GO:0003723(InterPro)
Hepe07g0050 664 Pfam KH domain 177 243 IPR004088 GO:0003723(InterPro)
Hepe07g0050 664 Pfam KH domain 590 653 IPR004088 GO:0003723(InterPro)
Hepe07g0050 664 CDD KH-I_PEPPER_rpt2_like 417 488 - -
Hepe07g0050 664 ProSiteProfiles Type-1 KH domain profile. 331 398 - -
Hepe07g0050 664 ProSiteProfiles Type-1 KH domain profile. 415 483 - -
Hepe07g0050 664 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 408 495 IPR036612 GO:0003723(InterPro)
Hepe07g0050 664 MobiDBLite consensus disorder prediction 1 23 - -
Hepe07g0050 664 Gene3D - 331 492 - -
Hepe07g0050 664 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 35 495 - GO:0003729(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0010468(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe07g0050 K21444 - - csv:101217605 1176.39
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g2005 Hepe-Chr4:74863782 Hepe07g0050 Hepe-Chr7:505566 9.73e-44 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1025 . . . . Bpe03g00230 . . . Cmo16g00045 . . . . . Sed07g0871 . Cpe14g00031 Bhi01g01505 Tan01g0081 Cmetu06g1355 . Hepe07g0050 Mch10g0048 . . . . . . . . Cone1ag0995 Cone5ag0699 . . . . . Cme06g01156 Blo07g00331 . . . . . . . . . . Cma16g00038 Cma18g01323 Car16g00038 Car18g01235 . . . . . . . . . Cla05g00979 Cam05g1071 . . . . Cre05g1090 . Csa03g01974 Chy06g01186 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007315 0 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 2 1 37