Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe07g0062 ATGGATTTGGATAGTATTGAGTGTGTATCATCTTCAGATGGTCTCGATGAGGATGAGATCCATCTTCACCACACTCTTCATCCTTATTCCCATTCTCATCATCATCCAGACTTGTCTTCAACCAAGCCTCGTAATGGAATTAACAATAGCGCTATAACAGGCCCCACTGCCACTGCACCAGCCACTAGCGTCCATGAATTGCTCGAGTGCCCTGTCTGCACCAATTCTATGTATCCTCCCATCCACCAGTGCCACAATGGACATACCTTATGTTCTACATGTAAAACACGGGTTCATAATCGCTGCCCTACTTGTAGACAAGAGCTTGGAGATATTAGGTGCTTAGCACTGGAGAAGGTGGCAGAGTCACTAGAATTGCCTTGCAAGTATTATTCCTTGGGGTGCCCAGAAATATTTCCATACTACAGTAAACTTAAACATGAGGCTTTGTGCAACTTCAGACCCTACACTTGCCCATATGCTGGGTCGGAATGCTCTGCTGTTGGGGATATTCCTTTCCTTGTTGCCCATTTGAGGGATGATCACAAGGTGGACATGCACACTGGATGCACATTTAATCATCGCTATGTGAAATCCAATCCAAGGGAAGTGGAGAATGCCACTTGGATGCTTACTGTTTTCCATTGTTTTGGTCAATATTTCTGCCTTCACTTTGAAGCCTTTCAGCTTGGCATGGCCCCAGTCTATATGGCTTTCCTTCGTTTCATGGGTGATGAGAATGAAGCGCGAACCTACTGCTACAGTCTCGAGGTGGGTGGATACGGGCGAAAACTGATATGGGAGGGCACCCCACGAAGTATTAGAGATAGTCATCGAAAAGTGAGGGACAGCCACGATGGACTAATCATTCAAAGAAATATGGCTCTTTTCTTCTCTGGTGGTGATAGGAAGGAACTGAAGCTGAGAGTTACGGGAAGGATATGGAAGGAACAAAACCCAGATGCCGGGGTCTGCATACCGAACCTGTGTAGCTAA 996 46.08 MDLDSIECVSSSDGLDEDEIHLHHTLHPYSHSHHHPDLSSTKPRNGINNSAITGPTATAPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCPEIFPYYSKLKHEALCNFRPYTCPYAGSECSAVGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARTYCYSLEVGGYGRKLIWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQNPDAGVCIPNLCS 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 572045 574574 + Hsped.07g00620.1 Hepe07g0062 573457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe07g0062 331 MobiDBLite consensus disorder prediction 27 53 - -
Hepe07g0062 331 CDD RING-HC_SIAHs 68 106 - -
Hepe07g0062 331 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 123 176 IPR013083 -
Hepe07g0062 331 CDD Sina 184 312 - -
Hepe07g0062 331 Pfam E3 ubiquitin-protein ligase sina/sinah, RING finger 70 105 IPR049548 -
Hepe07g0062 331 FunFam E3 ubiquitin-protein ligase SINAT5-like 179 311 - -
Hepe07g0062 331 FunFam E3 ubiquitin-protein ligase SINAT3 122 178 - -
Hepe07g0062 331 ProSiteProfiles Zinc finger SIAH-type profile. 123 183 IPR013010 GO:0008270(InterPro)
Hepe07g0062 331 Pfam Sina, TRAF-like domain 214 311 IPR018121 GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro)
Hepe07g0062 331 FunFam E3 ubiquitin-protein ligase SINAT3 11 121 - -
Hepe07g0062 331 SUPERFAMILY RING/U-box 58 110 - -
Hepe07g0062 331 Pfam Sina, zinc finger 119 194 - -
Hepe07g0062 331 SUPERFAMILY TRAF domain-like 123 315 - -
Hepe07g0062 331 ProSiteProfiles Zinc finger RING-type profile. 70 106 IPR001841 -
Hepe07g0062 331 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 45 313 IPR052088 GO:0005737(PANTHER)|GO:0061630(PANTHER)
Hepe07g0062 331 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 177 311 IPR008974 GO:0005515(InterPro)
Hepe07g0062 331 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 31 122 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g2500 Hepe-Chr2:71600409 Hepe07g0062 Hepe-Chr7:572045 5.86e-169 dispersed
Hepe03g0666 Hepe-Chr3:15246960 Hepe07g0062 Hepe-Chr7:572045 3.21e-182 dispersed
Hepe07g0062 Hepe-Chr7:572045 Hepe08g0073 Hepe-Chr8:569988 8.27e-153 dispersed
Hepe07g0062 Hepe-Chr7:572045 Hepe07g0063 Hepe-Chr7:575344 2.10e-193 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe07g0062 K04506 - csv:101215696 667.537