Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe07g0066 ATGGGCTATGGCAGACTCAACCCAACCGGCTCCGGCTCCGGCTCCGGCTCCGTCGCCTTCCAACTCTCAGACGACACCGTTTCATTCCCCACTCCCAATCCAAGGAGAAGACGACTCCTCCTGCTCTCCATCGTCTCTGTCTTCCTCATCGTCACCGCCGCCGTCTCCGCCACCTTCCTCGTCGCCCTCCGTACCACCTCCCCTTCCCGATCCACCTCCCCAAACATCCCTCGCAAACCCACTCAGGCTATTTCAAAAGCCTGCAGCCGAACTCGCTTCCCGACTCTCTGTGTCAACTCGCTCCTCGATTTCCCTGACTCTTTCAACGCCGCCGACGAACACGATCTCGTCCACATTTCCTTCAACATGACTCTCCAGCATCTTAACAAAGCTCTCTATCTCTCCTCTGAGATCTCCTCTCTTCAAATGGATCTTCGCGTCCGCTCTGCTTACGATGCCTGTCTTGAACTCCTCGACGATTCCGTCGACGCTCTCTCTCGCTCCTTGCAGTCCGTTGCGCCTCCCTCTTCCGATGCCGCTCCCCAGCGACTTGGATCCTCTGATGACGTCGTCACCTGGCTCAGCGCTGCCCTCACCAATCAAGATACCTGTACGGATGGATTTTCTGAACTCGCCGGGACTGTCAAGGATCAAATGGCGGATAAACTCCATAATTTGTCGGAGCTGGTGAGTAATTGCTTGGCGCTGTTTTCTGGTGGTGAAACCAGTGATTTCTCTGGAGTGCCGATTCAGAACAAGCGGCGGTTGATGGACGCCGCCGGGAATGAGGAGAGTTCCGGTGACTTCCCTGAGTGGATGAATCGGAGAGAGAGGAGGTTGCTGACGCTGCCGGTGGGGGCGATTCAGGCCGATATTGTGGTTTCGAAGGACGGAAACGGAACGGTGAAGACAATCGCCGAAGCGATCAAAATGGCGCCGGAATACAGTAGCAGAAGGACGATCATCTACGTGATGGCAGGAAGGTACGAAGAGAAGAATCTAAAGGTGGGGAGGAAGAAAACGAACCTGATGTTTGTTGGGGATGGGAAGGGTATAACAGTCATTTCGGGTGATAAAAGTATTTTTGACAATGTGACAACTTTCCACACGGCGTCGTTTGCGGCCACTGGCGCCGGTTTAATATTGAGGGACATGACATTTCAGAATTGGGCCGGACCAGAACGGCATCAAGCGGTGGCGCTCCGAGTCGGTGCTGATCACGCCGTTGTGTATCGTTGCAACGTAATCGGTTTTCAAGACACTCTTTACGTCCATTCCAATCGTCAATTCTTTCGAGAGTGCGATATTTACGGTACCGTCGATTTCATCTTCGGCAACGCGGCGGTAGTGTTCCAGAACTGCAGTATTTACGCCCGGAAGCCAATGGACCTTCAGAAAAACACAATCACGGCCCAAAATCGAAAGGATCCGAATCAGAACACTGGAATTTCAATCCATGCTTGTCGGATTCTAGCCGCCTCTGATCTTGTGTCGTCCAATAGCAGCAATCCGACGTATTTGGGTCGTCCGTGGAAATTATACTCTCGAGTTGTTGTCATGTTATCGTACATCGGGGGCCACGTGCAGCCACGCGGTTGGCTGGAGTGGAACACCACGTTTGCATTGGACACGCTGTATTACGGTGAGTATATGAATTATGGGCCGGGTGGGGCAGTGGGCCAGAGGGTGACGTGGCCCGGGTATCGGGTCATAACGTCCACGGTGGAGGCGAGTAAGTTCACTGTGGCACAGTTCATTTACGGCTCGTCGTGGTTGCCGTCCACCGGGGTTGCATTTCTTGGAGGGTTAAATGTGTAA 1818 53.58 MGYGRLNPTGSGSGSGSVAFQLSDDTVSFPTPNPRRRRLLLLSIVSVFLIVTAAVSATFLVALRTTSPSRSTSPNIPRKPTQAISKACSRTRFPTLCVNSLLDFPDSFNAADEHDLVHISFNMTLQHLNKALYLSSEISSLQMDLRVRSAYDACLELLDDSVDALSRSLQSVAPPSSDAAPQRLGSSDDVVTWLSAALTNQDTCTDGFSELAGTVKDQMADKLHNLSELVSNCLALFSGGETSDFSGVPIQNKRRLMDAAGNEESSGDFPEWMNRRERRLLTLPVGAIQADIVVSKDGNGTVKTIAEAIKMAPEYSSRRTIIYVMAGRYEEKNLKVGRKKTNLMFVGDGKGITVISGDKSIFDNVTTFHTASFAATGAGLILRDMTFQNWAGPERHQAVALRVGADHAVVYRCNVIGFQDTLYVHSNRQFFRECDIYGTVDFIFGNAAVVFQNCSIYARKPMDLQKNTITAQNRKDPNQNTGISIHACRILAASDLVSSNSSNPTYLGRPWKLYSRVVVMLSYIGGHVQPRGWLEWNTTFALDTLYYGEYMNYGPGGAVGQRVTWPGYRVITSTVEASKFTVAQFIYGSSWLPSTGVAFLGGLNV 605
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 602499 605853 - Hsped.07g00660.1 Hepe07g0066 573461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe07g0066 605 NCBIfam pectinesterase inhibitor domain 58 237 IPR006501 GO:0004857(InterPro)
Hepe07g0066 605 SMART PMEI_2 79 236 IPR006501 GO:0004857(InterPro)
Hepe07g0066 605 PANTHER PECTINESTERASE 42 594 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Hepe07g0066 605 Pfam Pectinesterase 291 588 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Hepe07g0066 605 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 82 238 IPR035513 -
Hepe07g0066 605 ProSitePatterns Pectinesterase signature 2. 436 445 IPR033131 -
Hepe07g0066 605 SUPERFAMILY Pectin lyase-like 287 601 IPR011050 -
Hepe07g0066 605 Gene3D Invertase/pectin methylesterase inhibitor family protein 80 239 IPR035513 -
Hepe07g0066 605 CDD PMEI-like_3 87 238 - -
Hepe07g0066 605 Gene3D - 285 603 IPR012334 -
Hepe07g0066 605 FunFam Pectinesterase 80 240 - -
Hepe07g0066 605 FunFam Pectinesterase 285 603 - -
Hepe07g0066 605 Pfam Plant invertase/pectin methylesterase inhibitor 83 236 IPR006501 GO:0004857(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe07g0066 Hepe-Chr7:602499 Hepe09g1678 Hepe-Chr9:50373634 1.44e-139 dispersed
Hepe09g0960 Hepe-Chr9:9721391 Hepe07g0066 Hepe-Chr7:602499 1.75e-15 dispersed
Hepe06g0790 Hepe-Chr6:54636648 Hepe07g0066 Hepe-Chr7:602499 2.83e-251 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe07g0066 - - - 0.0