Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe07g0068 ATGATAATCAAACGCAATCTGAAATCCCAAATGCCGAATCTGAAACGGTGCAGACTCGGTGACTCGGTTGGTGAAGACGACGAAAGCTCGGCAGCGAGGAAGAAGAGAAAGCTAATCGGTTATTACCCACTTAATCTTCTCGGCGAGGTTGCCGCTGGGATAATCCCTTTGAAGCTTCACGACATTCTCGGCGCCAACAACAAGGGGATTTCGGCCTCATGGTGTACCCAAATTTCTTGTTCCGCCATGGAAATGGAGTCGAAGTCGAATAGCCGAGATTCGTTAGCGAGAGAAGCTTCGAAAAGGCCGGCCGAGGTCCCACGGCCGCCCCTTGTGAGGACTTCGAGAGGACGGGTTCAGGTACTTCCTTCTCGCTTTAACGATTCTGTAATTGAGAATTGGAGGAAAGACAGCAAGACTAGCTTGCGTGATTACAGTTTCGATGAGGAATTCAAATGTAAGAAGGAGAAATTCAGTTTCAAGACTCCTGGAATTTGTAATGGGACTGCCAAGAAAGTAAAGAACGGTGAGAAATTGGGTTTTAAGTTCGTCAAGTGTCCGGCATTGTGTCAAGAGGAGGAAGAGTTCAAGAATTTCGATTTCAGGAAGTATTCGAGCTCTCGCAGTTCACTAACTTCGGTTCATGAGACTGTTGTTGAAGATGAGAAGTTCCCAGTTGATGTAGTTGGTGAAGATGGAAATCCAAAGGAAACTAAACCGAAGGATGGTTTATATGGACCTGAAGATTTCTATTCAGGCGATATTGTTTGGGCAAAGGCAGGGAGGAAGGAGCCCTTTTGGCCTGCCATTGTCATTGATCCTATAACTCAGGCACCTGAATTAGTTTTGAGAGCTTGTGTTGCCGATGCAGCTTGCATTATGTTCTTTGGATATTCGGGGAACGAAAATCAAAGGGATTATGCGTGGGTCAGGCGGGGGATGATCTTTCCATTTATGGATTTTGTAGACAGGTTCCAAGGACAGCCAGAATTGGATAGATGCAAACCCAACGAGTTCCAGATTGCAATAGAGGAAGCATTTTTGGCAGAGCGTGGATTTACAGAGAAATTGATTGCAGATATTAATATGGCAGCTGGAAATACGATTGCTGATGAATTTCTTTTTCGAGGGACACAGGAAGCCACTGGTTCTAACCAGGATCCTGACTGTCATTCTCCTCCTAAGCGGACTAGTTGCATTAAGGAAATGTATGCGAAGCGGAAAGATGGGCGGCATTGTGAGGGCTGTGGCCAAACACTTCCTGTAAAATTGGTGAAGAAAATGAAAGCTTCACCTCCTGGAAGTCAATTTTTATGTAAATCATGCACAAGGTTAACGAATTCAAAACATAATTGCGGCATTTGCAAGAAGATTTGGAATCATTCAGATAGTGGTAGTTGGGTTCGTTGCGATGGTTGTAAAGTATGGGTGCATGCAGCGTGTGACAAAATTTCAAGCAACCTGTTCAAGGATCTGGGAAGTACTGATTATTTCTGCCCTACGTGCAAAGCAAAATTTGATTTTGAATTATCAGATTCAGAAAAATCACGACCCAAAGTCAAAGGGAAGACAAATAATGATGGAACGATTCGTTCTAACAAAGTTACTGTGCTCTGCAATGGTGTGGAAGGCATTTATTTTCCAAGCCTTCACCTAGTTGTGTGCAAGTGTGGTTCATGTGGGTCAGAAAAACAAGCACTTAGTGAGTGGGAACGGCATACTGGATCTAAGTCAAGGAATTGGAAGACCAGTGTGAGGGTAAAAGATTCCATGCTGCCCCTAGAACAATGGATGTTGCAATTAGCTGAGTACCATGCAAGTGTTGGTTCTGTCAAGCATCCTAAACGGCCTTCCATGAAAGAACGAACGCAAAAGTTGCTCACCTTTTTGCAGGAGAAATATGAACCTGTTTATGCAAAGTGGACAACAGAGAGATGTGCTGTCTGTAGATGGGTTGAAGATTGGGACTACAATAAGATCATTATCTGCAACAGATGTCAGATAGCAGTTCATCAAGAATGCTATGGAGCTAGAAATGTTCGGGATTTAACATCTTGGGTCTGTAAAGTGTGTGAAACTCCTGATGTTAAGCGGGAATGTTGCCTCTGTCCAGTAAAAGGGGGTGCCTTGAAGCCCACTGATGTCGACGCATTATGGGTCCATGTTACCTGTGCTTGGTTTAGGCCCGAAGTTTCTTTCGCAAGTGATGAGAAAATGGAACCTGCTCTTGGTATCTTGAGTATCCCGTCGAATTCTTTTGTAAAGATTTGTGTAATCTGTAAGCAAATTCACGGTTCATGCATGCAATGCTGCAAGTGCTCTACTTACTACCATGCTATGTGTGCATCAAGAGCAGGCTATTGCATGGAGTTGCACTGCCTGGAGAAGAATGGTAGACAAACCACAAAAATGGTGTCTTATTGTGCTTATCATAGGGCTCCGAATCCGGATACTGTTCTTATCATACAAACTCCTCTTGGGGTATTTTCTACTAAAAGCCTTCTTCAGAATAAGAAGAGAGCCGGCTCAAGGTTAATTTCATCTAACAGAAAGGAAATAGAAGAAGTATCTGAAACTTCTGAACTTGAGCCATTTTCTGCTGCAAGGTGTCAGGTTTATACAAGATCAACTAGTGTGAAGAAGAGAATTGTTGAGGAAGCGGTTATTCACAAAGTGATGGGACCATGCCATCATCCTTTACAAGCATTACAAAGTCTTAATACATTCAGCTTACCGATGGTAGAGGAACCGAAGATCTTTTCCTCATTTCGGGATCGATTGCGCCACTTACAAAGAACGGAGAACGATCGGGTATGCTTTGGTAGATCGGGTATACATGGATGGGGGCTTTTTGCACGTAGAAACATTCAAGAAGGAGAAATGGTTCTTGAATATCGCGGTGAACAAGTGAGGCGCACAATTGCTGATCTAAGGGAAGCACGGTACAGATCGGCGGGCAAAGACTGCTATCTTTTTAAGATCAGCGAGGAAGTAGTTGTCGATGCCACCGACAAAGGAAATATAGCACGCTTGATCAACCATTCATGTATGCCCAACTGCTATGCAAGGATCATGAGTGTGGGGGACGACGAGAGTCGGATTGTACTCATCGCCAAGGCTAATGTCCCTGCTGGCGAAGAGCTAACGTACGATTATTTGTTCGATCCCGACGAACCGGATGAATTCAAAGTCCCGTGTCTATGTAAAGCTCCAAACTGTCGGAAGTTCATGAATTAG 3237 44.02 MIIKRNLKSQMPNLKRCRLGDSVGEDDESSAARKKRKLIGYYPLNLLGEVAAGIIPLKLHDILGANNKGISASWCTQISCSAMEMESKSNSRDSLAREASKRPAEVPRPPLVRTSRGRVQVLPSRFNDSVIENWRKDSKTSLRDYSFDEEFKCKKEKFSFKTPGICNGTAKKVKNGEKLGFKFVKCPALCQEEEEFKNFDFRKYSSSRSSLTSVHETVVEDEKFPVDVVGEDGNPKETKPKDGLYGPEDFYSGDIVWAKAGRKEPFWPAIVIDPITQAPELVLRACVADAACIMFFGYSGNENQRDYAWVRRGMIFPFMDFVDRFQGQPELDRCKPNEFQIAIEEAFLAERGFTEKLIADINMAAGNTIADEFLFRGTQEATGSNQDPDCHSPPKRTSCIKEMYAKRKDGRHCEGCGQTLPVKLVKKMKASPPGSQFLCKSCTRLTNSKHNCGICKKIWNHSDSGSWVRCDGCKVWVHAACDKISSNLFKDLGSTDYFCPTCKAKFDFELSDSEKSRPKVKGKTNNDGTIRSNKVTVLCNGVEGIYFPSLHLVVCKCGSCGSEKQALSEWERHTGSKSRNWKTSVRVKDSMLPLEQWMLQLAEYHASVGSVKHPKRPSMKERTQKLLTFLQEKYEPVYAKWTTERCAVCRWVEDWDYNKIIICNRCQIAVHQECYGARNVRDLTSWVCKVCETPDVKRECCLCPVKGGALKPTDVDALWVHVTCAWFRPEVSFASDEKMEPALGILSIPSNSFVKICVICKQIHGSCMQCCKCSTYYHAMCASRAGYCMELHCLEKNGRQTTKMVSYCAYHRAPNPDTVLIIQTPLGVFSTKSLLQNKKRAGSRLISSNRKEIEEVSETSELEPFSAARCQVYTRSTSVKKRIVEEAVIHKVMGPCHHPLQALQSLNTFSLPMVEEPKIFSSFRDRLRHLQRTENDRVCFGRSGIHGWGLFARRNIQEGEMVLEYRGEQVRRTIADLREARYRSAGKDCYLFKISEEVVVDATDKGNIARLINHSCMPNCYARIMSVGDDESRIVLIAKANVPAGEELTYDYLFDPDEPDEFKVPCLCKAPNCRKFMN 1078
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 644193 653598 + Hsped.07g00680.1 Hepe07g0068 573463

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe07g0068 1078 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 1078 IPR025780 -
Hepe07g0068 1078 Pfam PHD-finger 452 502 IPR019787 -
Hepe07g0068 1078 CDD PHD_ATX3_4_5_like 645 691 IPR042011 -
Hepe07g0068 1078 ProSiteProfiles Post-SET domain profile. 1062 1078 IPR003616 -
Hepe07g0068 1078 SMART PHD_3 756 812 IPR001965 -
Hepe07g0068 1078 SMART PHD_3 645 692 IPR001965 -
Hepe07g0068 1078 SMART PHD_3 451 503 IPR001965 -
Hepe07g0068 1078 CDD PWWP_AtATX3-like 251 355 - -
Hepe07g0068 1078 Pfam PHD-zinc-finger like domain 699 811 - -
Hepe07g0068 1078 FunFam Histone-lysine N-methyltransferase 695 814 - -
Hepe07g0068 1078 CDD ePHD_ATX3_4_5_like 700 811 IPR041955 -
Hepe07g0068 1078 ProSitePatterns Zinc finger PHD-type signature. 646 691 IPR019786 -
Hepe07g0068 1078 ProSiteProfiles Zinc finger PHD-type profile. 643 694 IPR019787 -
Hepe07g0068 1078 CDD PHD_TCF19_like 451 502 - -
Hepe07g0068 1078 Gene3D SET domain 836 1078 IPR046341 -
Hepe07g0068 1078 SUPERFAMILY FYVE/PHD zinc finger 447 506 IPR011011 -
Hepe07g0068 1078 Pfam PHD-finger 658 692 IPR019787 -
Hepe07g0068 1078 SMART set_7 936 1059 IPR001214 GO:0005515(InterPro)
Hepe07g0068 1078 MobiDBLite consensus disorder prediction 89 114 - -
Hepe07g0068 1078 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 446 506 IPR013083 -
Hepe07g0068 1078 ProSiteProfiles Zinc finger PHD-type profile. 449 505 IPR019787 -
Hepe07g0068 1078 SUPERFAMILY SET domain 928 1075 IPR046341 -
Hepe07g0068 1078 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 637 695 IPR013083 -
Hepe07g0068 1078 SMART PostSET_3 1062 1078 IPR003616 -
Hepe07g0068 1078 PANTHER PHD FINGER PROTEINS 101 1078 IPR050701 GO:0006357(PANTHER)
Hepe07g0068 1078 CDD SET_SETD1-like 923 1074 - -
Hepe07g0068 1078 MobiDBLite consensus disorder prediction 90 104 - -
Hepe07g0068 1078 FunFam Histone-lysine N-methyltransferase 911 1078 - -
Hepe07g0068 1078 ProSiteProfiles Extended PHD (ePHD) domain profile. 697 812 IPR034732 -
Hepe07g0068 1078 FunFam Histone-lysine N-methyltransferase 633 694 - -
Hepe07g0068 1078 Pfam PWWP domain 253 347 IPR000313 -
Hepe07g0068 1078 SUPERFAMILY Tudor/PWWP/MBT 245 351 - -
Hepe07g0068 1078 Pfam SET domain 947 1052 IPR001214 GO:0005515(InterPro)
Hepe07g0068 1078 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 696 814 IPR013083 -
Hepe07g0068 1078 Gene3D - 247 353 - -
Hepe07g0068 1078 SUPERFAMILY FYVE/PHD zinc finger 644 708 IPR011011 -
Hepe07g0068 1078 ProSiteProfiles SET domain profile. 936 1053 IPR001214 GO:0005515(InterPro)
Hepe07g0068 1078 ProSiteProfiles PWWP domain profile. 252 321 IPR000313 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe07g0068 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1472 Hepe-Chr1:80049013 Hepe07g0068 Hepe-Chr7:644193 1.55e-24 dispersed
Hepe03g0965 Hepe-Chr3:49032355 Hepe07g0068 Hepe-Chr7:644193 1.88e-72 dispersed
Hepe05g0788 Hepe-Chr5:18632146 Hepe07g0068 Hepe-Chr7:644193 1.50e-10 dispersed
Hepe07g0068 Hepe-Chr7:644193 Hepe10g1435 Hepe-Chr10:51049986 1.89e-19 dispersed
Hepe07g0068 Hepe-Chr7:644193 Hepe03g0897 Hepe-Chr3:32745364 0.0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g912 . . . . Bpe03g00237 . . . . . . . . . Sed08g1878 . . Bhi01g01481 Tan01g0112 Cmetu06g2373 . Hepe07g0068 Mch10g0067 . . . . . . . . . . . . . . . Cme06g01133 . . . . . . . . . . . . . . . Cpe09g00030 . Bhi12g00774 . . Lac11g0079 Hepe06g0728 . Lcy12g0061 . . . . . . . . . Chy06g01210 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007355 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55871 PF13832 zf-HC5HC2H_2 7.70E-27 CL0390 Hepe TR