Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Hepe07g0070 | ATGTCGTCTACGCTGCTAGAGGTGACCCGCTCGTCGCACGAGGAGGCGGAGCGACTCGAGCGGCTCATTGTGAAGGAGCTTCAAAATGAACCTGCTTCCGGCAGGGACCGTTTGCTACAGAGTCACCGAGTCCGCAACATGATCGATACCATCCTCTCCACCACCGATAAACTCGTTGAGATTTATGAAGATAAGGATAGTGCCAGGAAAGATGAGATTGCGGCACTTGGAGGGCAAACAGCTTCAGGAACAAACGTTTTTAGTGCATTTTATGATAGACTGAAAGAGATTCGTGAATACCATAGAAGGCATCCAGCTGCACGTGTTGTTGATGTTAGTGAGGATGATGGTCTACTCAAAGAGGAACCACAAATTGAGTTCAGCGGAGAGGAAGCATATGGACGGTATCTTGACTTGCATGAACTGTACAACCAATATATTAATTCAAAATTTGGAGAGGCCATCGAGTACTCTTCTTACCTGGATGTTTTCTCACAACCCCAGAAAATCTCTCGCAAACTAAAGATTGCAAGACAATACAGGGAATACTTGGAGAATCTTCTTGCTTATCTCATTTATTTTTTCCAGCGTACAGAGCCCTTGCAAGATCTTGATCGAATATTCTCAAAGGTTGAATCTGAATTTGAAGAGCGATGGATCACTGGTACAATTGAAGGATGGGAGAACACTGGTCAAGATAATGGCCATGATCCTGCCCCGCATAGTCTTATTGATCTTGACTATTATAGCACAGTGGAAGAGCTGGTGGAACTAGGTCCTGAAAGGTTGAAGGAGGGGTTGGCATCTTTGGGACTGAAGACTGGCGGTACAGTTCAGCAGCGTGCAGAGAGGCTTTTCCTCACTAAGCATACACCTCTTCAATTGTTGGACAAAAAACACTTTGCAAAATCGTCTCGGCAACCGATTCAGAATGGGGCAGCTGCAGCTTCACTAAACAATGAGAATTTGAAACAAGTGGCCTTGACGGAGGCAAAAATTGAAAAATTGTGCGATCTTCTAGATGAGACGATCGCCCGAACCAAAGACAACATTGTTAAGAAGCAAGCCTTAACATATGAGGAAATTGAAGCAGAACGTGAGGAGGAAGAGACGCAAGCTGAGTCTGAAAGTGATGATGACGAGCAACAGATTTATAATCCGCTCAAGCTTCCAATGGGTTGGGACGGGAAACCAATTCCTTACTGGCTCTACAAGCTTCATGGCCTTGGTCAGGAATTTAAATGTGAGATATGTGGGAACTATAGTTACTGGGGTCGTAGAGCTTTTGAGCGACATTTCAAGGAATGGCGTCATCAACATGGAATGCGTTGCCTTGGTATTCCGAATACAAAGAACTTTAATGAAATCACATCTATTGAGGAGGCAAAAGACTTATGGAAACGAATTCAAGAACGACAAGGAGTTAACAAGTGGCGACCGGATCTGGAAGAAGAATACGAAGATAAGGAGGGTAACATTTACAATAAGAAAACATATACAGATCTGCAACGCCAGGGGTTGATATAA | 1527 | 44.14 | MSSTLLEVTRSSHEEAERLERLIVKELQNEPASGRDRLLQSHRVRNMIDTILSTTDKLVEIYEDKDSARKDEIAALGGQTASGTNVFSAFYDRLKEIREYHRRHPAARVVDVSEDDGLLKEEPQIEFSGEEAYGRYLDLHELYNQYINSKFGEAIEYSSYLDVFSQPQKISRKLKIARQYREYLENLLAYLIYFFQRTEPLQDLDRIFSKVESEFEERWITGTIEGWENTGQDNGHDPAPHSLIDLDYYSTVEELVELGPERLKEGLASLGLKTGGTVQQRAERLFLTKHTPLQLLDKKHFAKSSRQPIQNGAAAASLNNENLKQVALTEAKIEKLCDLLDETIARTKDNIVKKQALTYEEIEAEREEEETQAESESDDDEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKRIQERQGVNKWRPDLEEEYEDKEGNIYNKKTYTDLQRQGLI | 508 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 663585 | 675879 | - | Hsped.07g00700.1 | Hepe07g0070 | 573465 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Hepe07g0070 | 508 | PANTHER | SPLICING FACTOR SF3A-RELATED | 1 | 481 | IPR051421 | GO:0000398(PANTHER)|GO:0003723(PANTHER)|GO:0005681(PANTHER) | |
| Hepe07g0070 | 508 | Pfam | Replication stress response SDE2 C-terminal | 223 | 303 | IPR025086 | - | |
| Hepe07g0070 | 508 | Coils | Coil | 352 | 379 | - | - | |
| Hepe07g0070 | 508 | Pfam | SF3a60/Prp9 C-terminal | 389 | 508 | IPR024598 | GO:0000398(InterPro)|GO:0003723(InterPro)|GO:0005681(InterPro) | |
| Hepe07g0070 | 508 | Pfam | Pre-mRNA-splicing factor SF3A3, of SF3a complex, Prp9 | 126 | 173 | IPR031774 | - | |
| Hepe07g0070 | 508 | ProSiteProfiles | Zinc finger matrin-type profile. | 413 | 444 | IPR000690 | GO:0003676(InterPro)|GO:0005634(InterPro)|GO:0008270(InterPro) | |
| Hepe07g0070 | 508 | Pfam | Splicing factor SF3a60 binding domain | 80 | 105 | IPR021966 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Hepe03g0895 | Hepe-Chr3:32727086 | Hepe07g0070 | Hepe-Chr7:663585 | 1.60e-07 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Hepe07g0070 | K12827 | - | csv:101205916 | 957.207 |