Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe07g0070 ATGTCGTCTACGCTGCTAGAGGTGACCCGCTCGTCGCACGAGGAGGCGGAGCGACTCGAGCGGCTCATTGTGAAGGAGCTTCAAAATGAACCTGCTTCCGGCAGGGACCGTTTGCTACAGAGTCACCGAGTCCGCAACATGATCGATACCATCCTCTCCACCACCGATAAACTCGTTGAGATTTATGAAGATAAGGATAGTGCCAGGAAAGATGAGATTGCGGCACTTGGAGGGCAAACAGCTTCAGGAACAAACGTTTTTAGTGCATTTTATGATAGACTGAAAGAGATTCGTGAATACCATAGAAGGCATCCAGCTGCACGTGTTGTTGATGTTAGTGAGGATGATGGTCTACTCAAAGAGGAACCACAAATTGAGTTCAGCGGAGAGGAAGCATATGGACGGTATCTTGACTTGCATGAACTGTACAACCAATATATTAATTCAAAATTTGGAGAGGCCATCGAGTACTCTTCTTACCTGGATGTTTTCTCACAACCCCAGAAAATCTCTCGCAAACTAAAGATTGCAAGACAATACAGGGAATACTTGGAGAATCTTCTTGCTTATCTCATTTATTTTTTCCAGCGTACAGAGCCCTTGCAAGATCTTGATCGAATATTCTCAAAGGTTGAATCTGAATTTGAAGAGCGATGGATCACTGGTACAATTGAAGGATGGGAGAACACTGGTCAAGATAATGGCCATGATCCTGCCCCGCATAGTCTTATTGATCTTGACTATTATAGCACAGTGGAAGAGCTGGTGGAACTAGGTCCTGAAAGGTTGAAGGAGGGGTTGGCATCTTTGGGACTGAAGACTGGCGGTACAGTTCAGCAGCGTGCAGAGAGGCTTTTCCTCACTAAGCATACACCTCTTCAATTGTTGGACAAAAAACACTTTGCAAAATCGTCTCGGCAACCGATTCAGAATGGGGCAGCTGCAGCTTCACTAAACAATGAGAATTTGAAACAAGTGGCCTTGACGGAGGCAAAAATTGAAAAATTGTGCGATCTTCTAGATGAGACGATCGCCCGAACCAAAGACAACATTGTTAAGAAGCAAGCCTTAACATATGAGGAAATTGAAGCAGAACGTGAGGAGGAAGAGACGCAAGCTGAGTCTGAAAGTGATGATGACGAGCAACAGATTTATAATCCGCTCAAGCTTCCAATGGGTTGGGACGGGAAACCAATTCCTTACTGGCTCTACAAGCTTCATGGCCTTGGTCAGGAATTTAAATGTGAGATATGTGGGAACTATAGTTACTGGGGTCGTAGAGCTTTTGAGCGACATTTCAAGGAATGGCGTCATCAACATGGAATGCGTTGCCTTGGTATTCCGAATACAAAGAACTTTAATGAAATCACATCTATTGAGGAGGCAAAAGACTTATGGAAACGAATTCAAGAACGACAAGGAGTTAACAAGTGGCGACCGGATCTGGAAGAAGAATACGAAGATAAGGAGGGTAACATTTACAATAAGAAAACATATACAGATCTGCAACGCCAGGGGTTGATATAA 1527 44.14 MSSTLLEVTRSSHEEAERLERLIVKELQNEPASGRDRLLQSHRVRNMIDTILSTTDKLVEIYEDKDSARKDEIAALGGQTASGTNVFSAFYDRLKEIREYHRRHPAARVVDVSEDDGLLKEEPQIEFSGEEAYGRYLDLHELYNQYINSKFGEAIEYSSYLDVFSQPQKISRKLKIARQYREYLENLLAYLIYFFQRTEPLQDLDRIFSKVESEFEERWITGTIEGWENTGQDNGHDPAPHSLIDLDYYSTVEELVELGPERLKEGLASLGLKTGGTVQQRAERLFLTKHTPLQLLDKKHFAKSSRQPIQNGAAAASLNNENLKQVALTEAKIEKLCDLLDETIARTKDNIVKKQALTYEEIEAEREEEETQAESESDDDEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKRIQERQGVNKWRPDLEEEYEDKEGNIYNKKTYTDLQRQGLI 508
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
7 663585 675879 - Hsped.07g00700.1 Hepe07g0070 573465
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Hepe07g0070 508 PANTHER SPLICING FACTOR SF3A-RELATED 1 481 IPR051421 GO:0000398(PANTHER)|GO:0003723(PANTHER)|GO:0005681(PANTHER)
Hepe07g0070 508 Pfam Replication stress response SDE2 C-terminal 223 303 IPR025086 -
Hepe07g0070 508 Coils Coil 352 379 - -
Hepe07g0070 508 Pfam SF3a60/Prp9 C-terminal 389 508 IPR024598 GO:0000398(InterPro)|GO:0003723(InterPro)|GO:0005681(InterPro)
Hepe07g0070 508 Pfam Pre-mRNA-splicing factor SF3A3, of SF3a complex, Prp9 126 173 IPR031774 -
Hepe07g0070 508 ProSiteProfiles Zinc finger matrin-type profile. 413 444 IPR000690 GO:0003676(InterPro)|GO:0005634(InterPro)|GO:0008270(InterPro)
Hepe07g0070 508 Pfam Splicing factor SF3a60 binding domain 80 105 IPR021966 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g0895 Hepe-Chr3:32727086 Hepe07g0070 Hepe-Chr7:663585 1.60e-07 dispersed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe07g0070 K12827 - csv:101205916 957.207