Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe07g0083 ATGAGAGGTTTGAGATCGTCGAATACGAAGTACTTGCTGAAACTTGCTGTATTATGTCAATTTGTGCCAAGGTTTCTTCGAATCTATCCACTGTATAAAGAAGTTACAAGGACCTCGGGCATACTCATTGAAACTGCTTGGGCGGGAGCTGCATTTAATCTCTTTCTGTACCTGCTAGCCGGTCATGTATTTGGGGCAATCTGGTACTTATGTTCCATAGAACGAGAAGCCCAATGCTGGCAACATGCTTGTAGCAAGCATCCTGGCTGTACCCCTACTTCCTTGTATTGTGATTACAGTTACATTTATGAAGGGACCCCATTCCTCAGTGTTTCTTGCCCACTCGAAAAGCCAAATGTAGGAATTTTTAACTTTGGAATATTCCTTGAAGCCCTTCAATCTGATATTGTGGAATCAGATTTTCTGAAAAAGTTCCTTCACTGCTTTTGGTGGGGCTTAAGGAATCTAAGCTCTTTGGGTCAAAATCTCATTACAAGTTCTTGCGCATGGGAAAACTGCTTTGCCATTTTGGTTTGCATCTCTGGCTTAGTGTTGTTTGCATCTCTCCTTGGCAACGTGCAGATGTATTGGCGATCCACAAACACAAGGGTGGAGGAGATGAGAGTGAGAAGGAGAGATGTTGAACAATGGATGTCACATCGCTTACTCCCTGAGAATATGAGGGAGCGGGTTCGAAGGTACGAACATTACATGTGGCATGAAACCAGAGGCGTTGATGAACATAATATGCTGCATAATCTGCCGAGCGACCTCCAACGAGATATTAAGCGCTGTCTTTGCTTGGCTTTGCTCATGCGAGTTCCAATGTTTGAAAAGGTGGATGAACAATTGTTGGATGCGATGTGTGCCCGTCTCAAGCCAGTTCTGTACACAGGAGAAAGCTGCATTGTTCGGGAAGGTGATCCAGTCGATGAGATGCTCTTCATCATGCGAGGCAAGCTCTTAACCATGACTACAAATGGTGGGAGAACTGGTTTCTTCAACTCTGATTTCCTCATGGCTGGTGATTTCTGTGGAGAAGAGCTACTGACTTGGGCTCTAGATCCTCATTCCTCATCCAATCTCCCCATTTCAACTCGAACCGTCCGATCTCTAACAGAAGTCGACGTATTTGCTTTAAAACCCGATGACTTGAAATTTGTAGCCTCTCAATACCGCAGGCTTCACAGCAAGCGGCTGCGCCAGATTTTCAGATTTTACTCACAGCAATGGAGAACCTGGGCAGCTTGTTTTGTACAAGCAGCATGGCGGCGCCATCGAAGGAAGAAGCTCAGAGAGTCTCTCAGGGAAGAAGAGAGAAGGTTGAAAGACGCATTGGCTTGCTTCGAGGGGCGATCGCCAAGTTTAGGCGCCACCATTTATGCATCTAGATTTGTTGCTAACATGCTTCGTGCGATGAGACGAAATTGTAATAGGAAAGCTAGGATGTCCATGCTGCTTCAGAAGCCAGCAGAGCCTGATTTTACCTTGGATGAAGATAGCACATAA 1509 45.46 MRGLRSSNTKYLLKLAVLCQFVPRFLRIYPLYKEVTRTSGILIETAWAGAAFNLFLYLLAGHVFGAIWYLCSIEREAQCWQHACSKHPGCTPTSLYCDYSYIYEGTPFLSVSCPLEKPNVGIFNFGIFLEALQSDIVESDFLKKFLHCFWWGLRNLSSLGQNLITSSCAWENCFAILVCISGLVLFASLLGNVQMYWRSTNTRVEEMRVRRRDVEQWMSHRLLPENMRERVRRYEHYMWHETRGVDEHNMLHNLPSDLQRDIKRCLCLALLMRVPMFEKVDEQLLDAMCARLKPVLYTGESCIVREGDPVDEMLFIMRGKLLTMTTNGGRTGFFNSDFLMAGDFCGEELLTWALDPHSSSNLPISTRTVRSLTEVDVFALKPDDLKFVASQYRRLHSKRLRQIFRFYSQQWRTWAACFVQAAWRRHRRKKLRESLREEERRLKDALACFEGRSPSLGATIYASRFVANMLRAMRRNCNRKARMSMLLQKPAEPDFTLDEDST 502
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 779978 785232 - Hsped.07g00830.1 Hepe07g0083 573478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe07g0083 502 Pfam Cyclic nucleotide-binding domain 297 390 IPR000595 -
Hepe07g0083 502 ProSiteProfiles cAMP/cGMP binding motif profile. 276 360 IPR000595 -
Hepe07g0083 502 Gene3D Jelly Rolls 274 394 IPR014710 -
Hepe07g0083 502 SMART cnmp_10 276 407 IPR000595 -
Hepe07g0083 502 FunFam Cyclic nucleotide-gated ion channel 1 203 267 - -
Hepe07g0083 502 Gene3D - 7 197 - -
Hepe07g0083 502 Pfam Ion transport protein 21 196 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe07g0083 502 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 2 489 - -
Hepe07g0083 502 SUPERFAMILY cAMP-binding domain-like 205 401 IPR018490 -
Hepe07g0083 502 Gene3D Helix hairpin bin 199 267 - -
Hepe07g0083 502 Coils Coil 428 452 - -
Hepe07g0083 502 FunFam Cyclic nucleotide-gated ion channel 1 274 392 - -
Hepe07g0083 502 SUPERFAMILY Voltage-gated potassium channels 22 241 - -
Hepe07g0083 502 CDD CAP_ED 276 395 IPR000595 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe06g0783 Hepe-Chr6:54472140 Hepe07g0083 Hepe-Chr7:779978 6.79e-254 dispersed
Hepe07g0083 Hepe-Chr7:779978 Hepe08g2208 Hepe-Chr8:61746422 9.21e-179 dispersed
Hepe07g0082 Hepe-Chr7:769969 Hepe07g0083 Hepe-Chr7:779978 8.70e-113 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe07g0083 K05391 - csv:101214911 805.823