Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe07g0087 ATGGGAGTTGTGACTGTATCAAGCTCAGCAGCACGAACTCCTCTTCGGCTGGGTGCGAAATTCTCTAATCACAATTCTACATTGAAAAGACCATCGATTGTCGCTTTTAAAGCGGATAAGCACACGACCACTAGCTTGGTCTCGACTCACGAGCAAGTAACCCTGCCTGTGGAGAGTAATAACAGAAACCAGAAAAGATCAGGAAAAACTAGCAAATCTTTGAAGAGAGTTAAAGCTGTCTTGATCGATGAAGCTACTCCATGTACTTTGGATGTGGATTACAATGAGGCTGCTGCTAAACTTGAAAACATATTCAAGCTTAGCCCTGTGATAGAGGATACTGATGTGGAAAGTAAAGATGGAAGAACAAAGAAAAGCCAGCAGAGAAGGAAAAATTCAGACAAGAGACCTAGTGATGGCGTAGTCAGGAACGGGACTAAGAGGATTAAGCGGCTAGATCTCGACAAGAGGATAGCATTGAAATGTAATAAGGACGGAAAAACAGCTCCTTCATTAAGGAAACAAAAAGATACCAAAAATGAAGCTGATGAGATTGATGGTCTTGTAAGAGACTACTCTGCTTCAACTGATTTGGTTAGTTTGGACTGGAAAAAAATGAAGATTCCTCCTGTTCTTCCTTCATCAGAGCATACCCGTTTGTTCAAGTCGGTTCAACCAATGAAGGCACTTAATCAAGTACAAGAAGAGCTGCAGAAAGAATTGGGAAGAGAACCAACTGAAGGTGAATTGGCCAATGCGACAAATATGAATGTAATTCAAGTAAGAAGACAATTGGAGGTCGGTCGTGCTGCCAGAAACAAGCTCATCAAGCACAATCTCCGTCTTGTATTATTTGTGATCAACAAATACTTTGAAGATTTTGCAAGTGGACCGAAATTTCAAGACCTTTGTCAAGCAGGAGTCAAGGGACTCATTACAGCAATTGATCGCTTTGAGCCAAAGAGGAGATTCCGGCTATCGACTTATGCTTTATTTTGGATAAGGCATGCTATCATTCGGTCAATGACTCTCTCGAGCTTCACACGTGTCTCATTTGGACTTGACTCGATAAGAGTTGAAATTCAAAAGGCTAAACTTCAGTTATTATGTGAGCTTCATAGATTACCGACAGAGGACGAGATAATTGCAAAAGTTGGCATCTCACATGAGAGGTACCTAGAAGTAATGAGGGCTACGAAACCAGTTTACTCTCTCAATTCTAGGCATTCAATTACATCAGAAGAGTTTATCAATGGAATCACTGATGTAGAAGGTACTGGAGGCGACAACCGGAGGCAACCAGCTCTTCTGAGGCTTGCTCTTGACGATGTGCTTGATTCTCTAAAACCAAAAGAGAGCTTAGTGATCAGACAAAGATACGGTCTCGATGGAAAAGGAAATCGAACATTAGGTGAGATAGCGGGGAATCTAAATATTTCTAGAGAAATGGTTCGGAAGCATGAAGTGAAAGCTCTCATGAAGCTCAAGCATCCTGGAAGAGTGGATTACCTTCGTCGGTATTTAATCTGA 1530 41.57 MGVVTVSSSAARTPLRLGAKFSNHNSTLKRPSIVAFKADKHTTTSLVSTHEQVTLPVESNNRNQKRSGKTSKSLKRVKAVLIDEATPCTLDVDYNEAAAKLENIFKLSPVIEDTDVESKDGRTKKSQQRRKNSDKRPSDGVVRNGTKRIKRLDLDKRIALKCNKDGKTAPSLRKQKDTKNEADEIDGLVRDYSASTDLVSLDWKKMKIPPVLPSSEHTRLFKSVQPMKALNQVQEELQKELGREPTEGELANATNMNVIQVRRQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPKFQDLCQAGVKGLITAIDRFEPKRRFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSIRVEIQKAKLQLLCELHRLPTEDEIIAKVGISHERYLEVMRATKPVYSLNSRHSITSEEFINGITDVEGTGGDNRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPGRVDYLRRYLI 509
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 814354 817555 - Hsped.07g00870.1 Hepe07g0087 573482

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe07g0087 509 Pfam Sigma-70 region 3 229 270 IPR007624 GO:0003700(InterPro)|GO:0006352(InterPro)|GO:0006355(InterPro)
Hepe07g0087 509 Pfam Sigma-70 region 3 359 423 IPR007624 GO:0003700(InterPro)|GO:0006352(InterPro)|GO:0006355(InterPro)
Hepe07g0087 509 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 193 342 IPR013325 GO:0003700(InterPro)|GO:0006352(InterPro)|GO:0006355(InterPro)
Hepe07g0087 509 MobiDBLite consensus disorder prediction 55 74 - -
Hepe07g0087 509 MobiDBLite consensus disorder prediction 115 145 - -
Hepe07g0087 509 Pfam Sigma-70 region 2 275 341 IPR007627 GO:0003700(InterPro)|GO:0006352(InterPro)|GO:0006355(InterPro)
Hepe07g0087 509 Gene3D - 266 343 - -
Hepe07g0087 509 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 435 507 IPR013324 -
Hepe07g0087 509 NCBIfam sigma-70 family RNA polymerase sigma factor 271 497 IPR014284 GO:0003700(InterPro)|GO:0006352(InterPro)|GO:0006355(InterPro)
Hepe07g0087 509 Gene3D - 348 400 IPR036388 -
Hepe07g0087 509 Gene3D - 224 265 IPR036388 -
Hepe07g0087 509 Pfam Sigma-70, region 4 444 497 IPR007630 GO:0003700(InterPro)|GO:0006352(InterPro)|GO:0006355(InterPro)
Hepe07g0087 509 PRINTS Major sigma-70 factor signature 469 484 IPR000943 GO:0003700(InterPro)|GO:0006352(InterPro)|GO:0006355(InterPro)
Hepe07g0087 509 PRINTS Major sigma-70 factor signature 302 315 IPR000943 GO:0003700(InterPro)|GO:0006352(InterPro)|GO:0006355(InterPro)
Hepe07g0087 509 PRINTS Major sigma-70 factor signature 326 334 IPR000943 GO:0003700(InterPro)|GO:0006352(InterPro)|GO:0006355(InterPro)
Hepe07g0087 509 PRINTS Major sigma-70 factor signature 484 495 IPR000943 GO:0003700(InterPro)|GO:0006352(InterPro)|GO:0006355(InterPro)
Hepe07g0087 509 PRINTS Major sigma-70 factor signature 448 460 IPR000943 GO:0003700(InterPro)|GO:0006352(InterPro)|GO:0006355(InterPro)
Hepe07g0087 509 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 97 508 IPR050239 -
Hepe07g0087 509 Gene3D - 432 509 IPR036388 -
Hepe07g0087 509 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 356 408 IPR013324 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe07g0087 K03093 - - csv:101208584 874.004
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g0435 Hepe-Chr3:6508171 Hepe07g0087 Hepe-Chr7:814354 1.62e-35 dispersed
Hepe07g0087 Hepe-Chr7:814354 Hepe10g0389 Hepe-Chr10:4255656 1.05e-25 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g868 Blo06g01076 . . . . . . . Cmo16g00073 Cmo18g01330 . . . . Sed07g0818 . Cpe14g00055 Bhi01g01453 Tan01g0146 Cmetu06g0694 . Hepe07g0087 . . . . . . . . . . . Cone14ag0030 Cone15ag0032 . . . . . . . Bda15g00776 . Bpe12g00373 . . . . . Cma16g00070 Cma18g01301 Car16g00061 Car18g01217 Cpe09g00041 . . . . . . . . Cla05g00949 Cam05g1040 Cec05g1045 Cco05g1039 Clacu05g1031 Cmu05g0981 Cre05g1060 . Csa03g02199 Chy06g01254 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005753 1 2 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 2 1 38