Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe07g0101 ATGAAAAGAGTTCACATGTCGAATCAAATTCGTAGCCGCTCGGGTTTGCGGATTTTGTCTGCTATCTTCAATGGCTGTGTTGGATTGGTGTACCTTGCCTTGGGAATTTGGATTCTGGTGGAGAAGTTGAGGAAACATCATACTGCTTTGCCTTTGCAGCTGTGGTTATCAGCTTCCTTCCATGGCTTCACATGGTTGTTGGTGAGCTCCATTATCAGTTTCTGGAGTAAACAGCTTCCAAGAGCCTTGTTGCGCCTATTGTCCATTGCGGCATTCGTGTTTGCTGGGGTTGTTTGTGTTCTATCACTTTTCGACGCTGTTTCGAGCAAAATAGCATCGGCAAAGATTGTTTTCGATGTTTTATCTGTTCCGGGATCAGTTCTATTGTTGCTTTGCTCTTTTGGTTGTTTTAGCCGCGAAGAGAGTGAGGAGAGTATCAATGGGAATGGACTTTACACCCCATTGAATGGTGAGGCCAATGAAAGTGGTAAGCTTGATCCTGTTACTCCACTAGCCAAAGCCGGATTGTTGAGTAAAATTTCGTTTTGGTGGATGAATCCTTTAATGAAAAGGGGGAAGAAGAAGACTCTCAACAGTGAAGATTTACCGATGATGCGCGAGGAAGATCAAGCAGAAAGCTGTTACTTGCAGTTCATAAACCAAATGAGCGAGCAGAAAAGAAAAGAGCCAAGTTCCCAACCATCAATCTTCAAAGTCATTCTTTCATGCAATAGGAGGGATATAATATTGTCTGGATTTTTCGCTTTGTTGAAGATACTCTTTATCTCTGTTGGTCCTCTGCTTCTTAATGCTTTCATTTTGGTTGCTCAAGGACATCAAAGTTTCAAATATGAAGGTGTTGTGCTTGCCATTTCACTTTTCTTTTCGAAAAGCATCGAATCCTTATCACAAAGGCAATGGTACTTTAGAAGCAGGCTTGTTGGTCTTAAAGTCAGGTCTTTGCTCTCAGCAGCCATTTATAAGAAGCAATTGCGATTGTCCAATGAAGCTAAGTTGATGCACTCGAGTGGCGAAATCATGAACTATGTTACCGTCGACGCGTATAGGATTGGAGAATTCTCATACTGGTTCCACCAAACTTGGACCACAAGTCTTCAGCTATGTATTGCACTTCTGATCCTCTACAAAGCAGTGGGAATAGCAACCATTGCCTCCTTCTTAGTGATAATTCTATGTGTAGTTGGCAATACTCCAATTGCCAAGCTACAACATAAGTTTCAGAGTAAATTGATGGTGGCACAAGATGAGAGACTGAAAACGTTTACCGAGGCTCTTGTAAACATGAAGGTTTTGAAGTTATATGCTTGGGAAACCCATTTCAAGAATGTAATTGAGAAGTTAAGAAAGGAGGAGCACAAGTGGTTGTCAGCCGTGCAATTTCGAAAGGGATACAATGGCATTCTCTTTTGGTCATCTCCTGTTATTGTCTCTGTTGCAACCTTTGGGGCATGTGGCTTTTTGAACATTCCGCTACACGCCAACAATGTTTTCACTTTCGTATCGACATTGCGTCTTGTTCAAGAACCTGTTAGATCTATGTCTGATGTCATTGCGGCGATCATTCAAGCAAGAGTTTCGTTTACACGTATTGTTAACTTTCTGGAGGCGCCTGAGCTGCAAAGTTCAAGTGTTTGTAGGAAGCGTGTAAACACAAATGATAACTGCTCCATATGGATCGGTTCAGCATCTTTCTCGTGGGAAGATAATTCGACGAAGCCTACTCTTCGTAATATAAATCTAGAGGTTAGGCCAGGTTCAAAGGTTGCAATATGTGGAGAAGTTGGCTCAGGAAAATCAACTCTTCTAGCAGCCATTCTTGGTGAAATTCCAAATGTTGAGGGAAATTTTCAAGTTTATGGAAGGATTGCTTATGTGTCTCAAACAGCGTGGATCCAAACAGGGTCCATACAAGATAACATTTTATTTGGCTCTGAAATGGACAATTGGAGATATAGAGAAACACTCGAGAAGTGCTCATTGGTGAAGGATCTTGAGTTACTTCCTTATGGTGATCTCACTGAGATTGGGGAAAGAGGAGTAAATCTCAGTGGTGGACAAAAGCAGAGGATTCAACTGGCTCGTGCGCTGTATCAAAATGCCGATATATATCTTTTGGACGATCCATTTAGTGCTGTTGATGCACATACTGCCACAAGTTTGTTCAATGGATATGTCATGGAAGCGCTCTCGGAAAAAACGGTTCTTCTCGTGACTCATCAAGTTGATTTCCTGCCTGCTTTTGATTCTGTCCTGCTGATGTCGGACGGGGAAATTCTAGAAGCAGCCCCTTATGATCAGTTGTTGGCACATAGCAAAGAATTTCAGGACCTTGTCAATGCACACAAAGAGACTGCTGGAACTGAAAGGCTTGCAGATTTATCTGCTACCAAGAGTTTGAGAACATCTAGTAAAGAGATTAAGAAATCTTATACAGAGAAACAGTTTGTAGCATCTGAAGCTAATCAGTTAATTAAGCAGGAGGAGCGAGAAATCGGAGACTCAGGATTCAAGCCTTATATTCAGTATCTGAATCAGAACAAAGGGTTCTTCTTCTTCTCCTTAGATGTTCTCTCCCAATTAGCATTTGTGGCATGTGGAATAACACAAAACTCTTGGATGGCATCGAACATTGACAATCCCAATGTCAGCAACTCCCGCTTGATTGTAGTTTACTTGTTGATTGGAGTTACTTCAACATTATTCTTGGCTTCCAGATCTCTTTTCACAGCTCTTTTAGGTCTGCAATCATCAAAATCATTATTTTCTCAGCTACTAACATCTCTTTTTCGCGCACCGATGTCCTTCTATGACTCCACACCTCTTGGCAGGATACTTAGTCGGGTCTCAATGGATCTTAGTATTGTGGATCTTGATGTCCCATTCAGTTTAATATTTGCTGTTGGTGCAACCTCCAATGCGTATGCTGCTCTCGGAGTTTTAGCCGTAATCACGTGGCAGGTTCTATTCATCTCCATACCGACAATCATTATGGCAATTAGCTTGCAGAGATACTACTTTGCTTCTGCCAAAGAACTCATGCGTCTTAATGGGACAACAAAGTCAATGGTAGCAAATCATTTGTCTGAATCCATAGCTGGAGCAATGACAATTAGAGCTTTTGAAGAGGAAGAGAGGTTCTTTAAGAAAAATATGGAATTTGTTGATGGAAATGCCAGTCCTTTCTTCCACAATTTTTCGGCCAACGAGTGGCTGATACAGCGGTTAGAAATGCTCAGCGCGGTGGTCCTTGCCTCCGCCGCATTTTGCATAGTGTTACTACCAACTGGAAGCTTCAGCCCTGGTTTCATTGGAATGGCAATCTCTTATGGCCTTTCTTTAAATGTGTCCCTGGTCTTCTCCATCCAAAATCAATGTAATATAGCCAATCACATCATTTCTGTAGAAAGATTAAACCAATATATGCATTTATCAAGTGAAGCTCCCGAAATCATCGAAGAGAATCGTCCCCCAACCAACTGGCCCTGTATCGGAAAATTAGAGATAATCGACTTGAAGATACGCTACAGACCTAACACACCCCTTGTTCTTCATGGTATAAGCTGCACATTTGAAGGAGGGCATAAGATAGGTATTGTTGGTCGGACTGGCAGTGGGAAGTCTACTCTTTTAAGTGCCATATTCCGCTTGGTTGAGCCAGCGGGAGGAAAGATTTTAGTCGATGGTATCGACATCTGCTCGATTGGACTTCATGACCTGCGTTCACGTTTTGGAATTATACCTCAAGATCCAACCCTTTTTAAAGGGACTGTTAGATACAATTTGGATCCCTTAGTTCAGCATACTGATGAAGAAATATGGGAGGTACTTGGAAAGTGTCAACTTAGAGAGACTGTCGAAGAGAAAGAAGCGGGATTGGATTCCTTGGTTGTGGAAGATGGTTCAAACTGGAGCATGGGACAGCGCCAACTTTTCTGTTTAGGTCGCGTGCTGTTGAGGAGAAGTCGAATATTGGTGCTCGATGAAGCAACTGCATCAATCGACAATGCTACGGATATGATTCTGCAGAAGACTATTCGATCTGAATTCGAAGACTGTACTGTGATTACAGTTGCTCACAGAATACCAACTGTTATGGATTGCACAATGGTGCTTGCTATAAGTGATGGGAGAATAGCAGAATATGACGAACCGACCACATTGATCAAGAGAGAAGGCTCTCTATTTGGACAGCTTGTGAAAGAATACTGGTCTCACTCACAATCTGCAGAATAA 4254 42.08 MKRVHMSNQIRSRSGLRILSAIFNGCVGLVYLALGIWILVEKLRKHHTALPLQLWLSASFHGFTWLLVSSIISFWSKQLPRALLRLLSIAAFVFAGVVCVLSLFDAVSSKIASAKIVFDVLSVPGSVLLLLCSFGCFSREESEESINGNGLYTPLNGEANESGKLDPVTPLAKAGLLSKISFWWMNPLMKRGKKKTLNSEDLPMMREEDQAESCYLQFINQMSEQKRKEPSSQPSIFKVILSCNRRDIILSGFFALLKILFISVGPLLLNAFILVAQGHQSFKYEGVVLAISLFFSKSIESLSQRQWYFRSRLVGLKVRSLLSAAIYKKQLRLSNEAKLMHSSGEIMNYVTVDAYRIGEFSYWFHQTWTTSLQLCIALLILYKAVGIATIASFLVIILCVVGNTPIAKLQHKFQSKLMVAQDERLKTFTEALVNMKVLKLYAWETHFKNVIEKLRKEEHKWLSAVQFRKGYNGILFWSSPVIVSVATFGACGFLNIPLHANNVFTFVSTLRLVQEPVRSMSDVIAAIIQARVSFTRIVNFLEAPELQSSSVCRKRVNTNDNCSIWIGSASFSWEDNSTKPTLRNINLEVRPGSKVAICGEVGSGKSTLLAAILGEIPNVEGNFQVYGRIAYVSQTAWIQTGSIQDNILFGSEMDNWRYRETLEKCSLVKDLELLPYGDLTEIGERGVNLSGGQKQRIQLARALYQNADIYLLDDPFSAVDAHTATSLFNGYVMEALSEKTVLLVTHQVDFLPAFDSVLLMSDGEILEAAPYDQLLAHSKEFQDLVNAHKETAGTERLADLSATKSLRTSSKEIKKSYTEKQFVASEANQLIKQEEREIGDSGFKPYIQYLNQNKGFFFFSLDVLSQLAFVACGITQNSWMASNIDNPNVSNSRLIVVYLLIGVTSTLFLASRSLFTALLGLQSSKSLFSQLLTSLFRAPMSFYDSTPLGRILSRVSMDLSIVDLDVPFSLIFAVGATSNAYAALGVLAVITWQVLFISIPTIIMAISLQRYYFASAKELMRLNGTTKSMVANHLSESIAGAMTIRAFEEEERFFKKNMEFVDGNASPFFHNFSANEWLIQRLEMLSAVVLASAAFCIVLLPTGSFSPGFIGMAISYGLSLNVSLVFSIQNQCNIANHIISVERLNQYMHLSSEAPEIIEENRPPTNWPCIGKLEIIDLKIRYRPNTPLVLHGISCTFEGGHKIGIVGRTGSGKSTLLSAIFRLVEPAGGKILVDGIDICSIGLHDLRSRFGIIPQDPTLFKGTVRYNLDPLVQHTDEEIWEVLGKCQLRETVEEKEAGLDSLVVEDGSNWSMGQRQLFCLGRVLLRRSRILVLDEATASIDNATDMILQKTIRSEFEDCTVITVAHRIPTVMDCTMVLAISDGRIAEYDEPTTLIKREGSLFGQLVKEYWSHSQSAE 1417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 964916 971725 + Hsped.07g01010.1 Hepe07g0101 573496

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe07g0101 1417 CDD ABCC_MRP_domain1 569 764 - -
Hepe07g0101 1417 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1173 1407 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Hepe07g0101 1417 FunFam ABC transporter C family member 10 548 800 - -
Hepe07g0101 1417 ProSitePatterns ABC transporters family signature. 689 703 IPR017871 GO:0005524(InterPro)|GO:0016887(InterPro)
Hepe07g0101 1417 Gene3D - 540 809 IPR027417 -
Hepe07g0101 1417 CDD ABC_6TM_ABCC_D1 250 537 IPR044746 GO:0140359(InterPro)
Hepe07g0101 1417 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 168 1408 IPR050173 GO:0016020(PANTHER)|GO:0042626(PANTHER)|GO:0055085(PANTHER)
Hepe07g0101 1417 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 249 529 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Hepe07g0101 1417 CDD ABC_6TM_ABCC_D2 855 1148 IPR044726 GO:0140359(InterPro)
Hepe07g0101 1417 FunFam ABC transporter C family member 10 232 545 - -
Hepe07g0101 1417 SUPERFAMILY ABC transporter transmembrane region 236 542 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Hepe07g0101 1417 Pfam ABC transporter 1190 1338 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Hepe07g0101 1417 Gene3D ABC transporter type 1, transmembrane domain 239 539 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Hepe07g0101 1417 FunFam ABC transporter C family member 5 823 1154 - -
Hepe07g0101 1417 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1163 1400 IPR027417 -
Hepe07g0101 1417 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 564 787 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Hepe07g0101 1417 Gene3D ABC transporter type 1, transmembrane domain 821 1154 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Hepe07g0101 1417 Pfam ABC transporter 582 716 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Hepe07g0101 1417 Gene3D - 1156 1408 IPR027417 -
Hepe07g0101 1417 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 894 1136 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Hepe07g0101 1417 FunFam ABC transporter C family member 3 1156 1408 - -
Hepe07g0101 1417 SMART AAA_5 1199 1391 IPR003593 GO:0016887(InterPro)
Hepe07g0101 1417 SMART AAA_5 591 764 IPR003593 GO:0016887(InterPro)
Hepe07g0101 1417 Pfam ABC transporter transmembrane region 248 516 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Hepe07g0101 1417 Pfam ABC transporter transmembrane region 859 1116 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Hepe07g0101 1417 CDD ABCC_MRP_domain2 1171 1391 - -
Hepe07g0101 1417 SUPERFAMILY ABC transporter transmembrane region 859 1156 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Hepe07g0101 1417 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 560 787 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe07g0101 K05666 - - csv:101210136 2497.23
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g1474 Hepe-Chr3:71513405 Hepe07g0101 Hepe-Chr7:964916 0.0 dispersed
Hepe03g1897 Hepe-Chr3:76025059 Hepe07g0101 Hepe-Chr7:964916 0.0 dispersed
Hepe06g1279 Hepe-Chr6:62640682 Hepe07g0101 Hepe-Chr7:964916 1.19e-236 dispersed
Hepe07g0101 Hepe-Chr7:964916 Hepe10g1866 Hepe-Chr10:55470961 0.0 dispersed
Hepe07g0101 Hepe-Chr7:964916 Hepe02g1096 Hepe-Chr2:13617156 0.0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g846 . . . Bda07g01915 Bpe03g00167 . . . Cmo16g00086 Cmo18g01320 . . . . . . Cpe14g00066 Bhi01g01434 . . . Hepe07g0101 Mch10g0103 . . . . . . . . Cone1ag0952 Cone5ag0661 . . Lsi05g01169 . . Cme06g01064 . Blo09g00046 . . . . . . . . . Cma16g00082 Cma18g01291 Car16g00072 Car18g01208 Cpe09g00051 . . . . . . . . Cla05g00937 Cam05g1026 Cec05g1030 Cco05g1026 Clacu05g1015 Cmu05g0968 Cre05g1049 . Csa03g02180 Chy06g01273 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003473 1 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 3 1 1 1 1 1 4 1 8 48