Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe07g0104 ATGTCTCAGGTTGTGGCTACGAGGTCTATTCACACCTCATTCCTTTGCCCTAGCTCGGGATCTGTGCAGGACCGGACGGACAAAGCTCGTTCTCTTGGTGTTGGCTCCAAAGTGTTGGCCAATGAGAAGAAGACCTGGAATTTTGGTTGCCGGAGTCGGAGGAGTGTAATCGCATCCAAGAGAGCTGCTCAAGTTGAAGTTGTTCCGGTTTCACCTGAAGATGTTCAGAAGGCAGATGAACAATTTGAACATTTACGAGCTGTGCAACAACTTGGTGATACGCCGGTTGGAATGTGGTCCAAACCAACAGTTAGACGTAAGACGAAAATTGTGTGCACGATTGGACCTTCGACTAACACGAAGGAAATGATTTGGAAACTGGCTGAGGCTGGAATGAATGTTGCCCGATTGAATATGTCCCATGGAGACCATGCATCTCATCAGAAAGTTATAGATTTAGTCAGAGAATACAATGCCCAAGCACTGGACAACTGCATTGCAATCATGCTTGATACCAAGGGTCCTGAGGTTAGGAGTGGTGACCTACCACAACCAATATTGTTAGAAAGTGGACAAGAATTCACTTTTACCATACGGAGAGGTGTTAGCACTTCAGATTCTGTCAGCGTGAACTATGATGATTTTGTTAATGATGTAGAAGTTGGGGACATGCTTCTTGTTGATGGTGGAATGATGTCGTTTGTGGTGACGTCTAAGACAGAGGATTCTGTCAAGTGTGAAGTTGTTGATGGAGGAGAGCTCAAGTCCAGACGACATTTAAATGTTCGAGGGAAAAGTGCAACACTGCCTTCCATTACTGAGAAGGATTGGGATGACATTAAATTTGGAGTTGACAACAAAGTTGATTTTTATGCTGTCTCATTCGTTAAAGATGCACAAGTAGTTCACGAGTTGAAGAATTATCTTAAAAGCTGTGATGCTGACATTCATGTCATTGTAAAAATAGAAAGTGCAGACTCCATACCAAATTTGCATTCAATTATTACAGCTTCGGATGGGGCAATGGTTGCAAGAGGCGATCTTGGTGCAGAACTCCCTATTGAAGAGGTTCCACTTCTGCAGGAGGAGATAATCAACCTGTGTCGAGGCATGGGGAAGGGTGTCATTGTGGCGACTAACATGCTTGAGAGTATGATTGTTCATCCAACTCCAACCAGAGCAGAAGTATCTGACATTGCTATTGCAGTTAGAGAGGGTGCTGATGCAGTCATGCTGTCTGGAGAAACTGCTCATGGAAAATTCCCATTAAAAGCTGTGAAAGTAATGCACACAGTTGCTTTACGGACTGAAGCAACCATAGAAGGTGGTCGAATGCCATTAAATCTCGGTCAAACATTCAAGAACCATATGAGTGAGATGTTTGCTTATCATGCTACAATGATGTCCAACACTCTTGGAACTTCAATAGTTGTCTTCACTAGAACTGGTTTCATGGCTATCCTCCTTAGCCATTACCGACCATCTGGGACGACATTTGCCTTTACAAATGATAAAAGGATACAACAGAGGTTGGCTTTATATCAGGGAGTGTGCCCCGTATACATGCAGTTCTCTGATGATGCTGAACAGACCTTTGCTGATGCCTTATCTCTGCTGCAGAAGCAAGGAATGGTGAAGGAAGGGGAAGAAGTAGCACTCCTTCAGAGTGGAAGACAACCGATTTGGCGGTTCCCATCGACTCACAACATTCAAGTCCGTAAAGTGTAG 1728 44.1 MSQVVATRSIHTSFLCPSSGSVQDRTDKARSLGVGSKVLANEKKTWNFGCRSRRSVIASKRAAQVEVVPVSPEDVQKADEQFEHLRAVQQLGDTPVGMWSKPTVRRKTKIVCTIGPSTNTKEMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVREYNAQALDNCIAIMLDTKGPEVRSGDLPQPILLESGQEFTFTIRRGVSTSDSVSVNYDDFVNDVEVGDMLLVDGGMMSFVVTSKTEDSVKCEVVDGGELKSRRHLNVRGKSATLPSITEKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCDADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQEEIINLCRGMGKGVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTEATIEGGRMPLNLGQTFKNHMSEMFAYHATMMSNTLGTSIVVFTRTGFMAILLSHYRPSGTTFAFTNDKRIQQRLALYQGVCPVYMQFSDDAEQTFADALSLLQKQGMVKEGEEVALLQSGRQPIWRFPSTHNIQVRKV 575
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 980918 987105 - Hsped.07g01040.1 Hepe07g0104 573499

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe07g0104 575 NCBIfam pyruvate kinase 106 572 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Hepe07g0104 575 Gene3D - 448 575 IPR036918 -
Hepe07g0104 575 FunFam Pyruvate kinase 271 436 - -
Hepe07g0104 575 PANTHER PYRUVATE KINASE 100 555 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0004743(PANTHER)|GO:0005737(PANTHER)|GO:0006096(PANTHER)|GO:0006096(InterPro)|GO:0009570(PANTHER)|GO:0030955(InterPro)
Hepe07g0104 575 Pfam Pyruvate kinase, alpha/beta domain 462 555 IPR015795 -
Hepe07g0104 575 SUPERFAMILY PK beta-barrel domain-like 175 266 IPR011037 -
Hepe07g0104 575 ProSitePatterns Pyruvate kinase active site signature. 316 328 IPR018209 GO:0004743(InterPro)|GO:0006096(InterPro)
Hepe07g0104 575 PRINTS Pyruvate kinase family signature 370 394 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Hepe07g0104 575 PRINTS Pyruvate kinase family signature 288 302 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Hepe07g0104 575 PRINTS Pyruvate kinase family signature 164 180 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Hepe07g0104 575 PRINTS Pyruvate kinase family signature 395 413 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Hepe07g0104 575 PRINTS Pyruvate kinase family signature 345 369 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Hepe07g0104 575 PRINTS Pyruvate kinase family signature 414 430 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Hepe07g0104 575 PRINTS Pyruvate kinase family signature 318 344 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Hepe07g0104 575 Gene3D - 108 433 IPR040442 -
Hepe07g0104 575 FunFam Pyruvate kinase 437 556 - -
Hepe07g0104 575 FunFam Pyruvate kinase 176 269 - -
Hepe07g0104 575 Pfam Pyruvate kinase, barrel domain 106 426 IPR015793 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Hepe07g0104 575 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 97 440 IPR015813 GO:0003824(InterPro)
Hepe07g0104 575 Gene3D - 176 269 IPR015806 GO:0004743(InterPro)|GO:0006096(InterPro)
Hepe07g0104 575 SUPERFAMILY PK C-terminal domain-like 424 575 IPR036918 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe07g0104 K00873 - - csv:101206887 1063.14
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe06g1748 Hepe-Chr6:68542388 Hepe07g0104 Hepe-Chr7:980918 2.00e-258 dispersed
Hepe07g0104 Hepe-Chr7:980918 Hepe07g0392 Hepe-Chr7:3994939 1.01e-92 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g836 . . . Bda07g01913 Bpe03g00165 . . . Cmo16g00089 Cmo18g01319 . . Car02g00961 . Sed05g0275 . Cpe14g00069 Bhi01g01431 Tan01g0170 Cmetu04g2585 . Hepe07g0104 Mch10g0106 . . . . . . . . Cone1ag0946 Cone5ag0665 . . Lsi05g01173 . . Cme06g01059 . Blo09g00048 . . . . . . . . . Cma16g00086 Cma18g01290 Car16g00075 Car18g01207 Cpe09g00052 . . . . . . . . Cla05g00935 Cam05g1022 Cec05g1026 Cco05g1022 Clacu05g1011 Cmu05g0964 Cre05g1045 . Csa03g02178 Chy06g01277 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001502 3 1 2 2 2 2 4 2 2 2 2 2 3 3 2 4 2 4 4 2 2 2 2 2 2 2 2 3 3 2 72