Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe07g0115 ATGACGCACTGTGTAGCCCAAGCATCATCGCTCTCGTCCTCCTCGGCTTTCAACCGGATGCTTACTTTGATTTACTCTTTTCCAGTCATATCCAATAGGATAGAATCTGTTAATTTTTCCCGGAGTGCAAGCAGTTCTGTGGTATGCGCTGCAAAAGGTCCACGGCCGAGGTATCCTCGGGTCTGGAAAACTCAAAAGAGAATTGGGACCATATCCAAGGCAGCAAGTCTTGTTGATTGTGTCAAGGGACTGTCTAACGTGAAAGAGGAAGTCTACGGGGCTCTCGATTCCTTCATTGCCTGGGAACTAGAGTTTCCTCTTATTACTGTAAAGAAGGCCCTGAAGACCTTAGAGAACCAAAGAGAATGGAAGAGGATAATTCAGTTGACGAAATGGATGTTAAGTAAAGGCCAAGGAAGAACAATGGGAAGCTATTTCACGTTATTAAATGCCTTAGATGAAGATGGAAGACTCGAGGAAGCTGAAGAGCTTTGGAACAAATTGTTTTCTCAGCATCTAGAGAGCATGCCTCGCATATTCTTTAATAAAATGACATCCATCTACTACAACCGGGGTATGCACGACAAATTATTTGAGGTATTTGCTGATATGGAGGAACTTGGAGTTCAACCAAATACGGCAATTGTCACTATGATTGGAAATGTCTTCCAAGAGTTGGGTATGCTCGATAAGTACAAAAAACTGAAGAAGAAATATCCCCCACCAAAATGGGAATATCGTTACATCAAAGGAAAGCGCGTAAAAATACAAGCAAAGTATCTGAAGGAAAATGGTAATTTCAACAATGGATCGAGTGAGCTTGATAAAAAGGAGCATAATTTCAACAATGGTTCGAGTGAGCTTGATAAAAAGGAGCATAGTTCAACAGAACCGTTGGAGGAAGCTGAAATAACTTCCGAGGATTCCAGTTTTGAAGATGGGGAAATGAGTGAAGATCCAGATGAAATTCTGGAAGATGAATATATGTCGAATGAATCCAATTTTGAGCAGGATTTCATGGTGTTTGGGCAATTGTAG 1038 41.33 MTHCVAQASSLSSSSAFNRMLTLIYSFPVISNRIESVNFSRSASSSVVCAAKGPRPRYPRVWKTQKRIGTISKAASLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQREWKRIIQLTKWMLSKGQGRTMGSYFTLLNALDEDGRLEEAEELWNKLFSQHLESMPRIFFNKMTSIYYNRGMHDKLFEVFADMEELGVQPNTAIVTMIGNVFQELGMLDKYKKLKKKYPPPKWEYRYIKGKRVKIQAKYLKENGNFNNGSSELDKKEHNFNNGSSELDKKEHSSTEPLEEAEITSEDSSFEDGEMSEDPDEILEDEYMSNESNFEQDFMVFGQL 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1072782 1075880 - Hsped.07g01150.1 Hepe07g0115 573510

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe07g0115 345 MobiDBLite consensus disorder prediction 301 332 - -
Hepe07g0115 345 MobiDBLite consensus disorder prediction 267 337 - -
Hepe07g0115 345 NCBIfam pentatricopeptide repeat 181 213 IPR002885 -
Hepe07g0115 345 Gene3D Tetratricopeptide repeat domain 72 241 IPR011990 GO:0005515(InterPro)
Hepe07g0115 345 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 177 211 IPR002885 -
Hepe07g0115 345 MobiDBLite consensus disorder prediction 272 300 - -
Hepe07g0115 345 PANTHER OS01G0757700 PROTEIN 23 266 IPR044646 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe07g0115 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g0510 Hepe-Chr4:57280783 Hepe07g0115 Hepe-Chr7:1072782 6.32e-58 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g784 . . Bda05g00096 . Bpe03g00260 . Bma10g01260 . . Cmo18g01307 . . . . Sed07g2526 . . Bhi01g01417 Tan01g0183 Cmetu10g1018 . Hepe07g0115 Mch10g0118 . . . . . . . . . . Cone14ag0053 . Lsi05g01184 . . Cme06g01045 Blo07g00369 . . . . . . . . . . . Cma18g01276 . Car18g01190 Cpe09g00061 . . . . . . . . Cla05g00923 Cam05g1011 Cec05g1015 Cco05g1011 Clacu05g1000 Cmu05g0953 Cre05g1034 . Csa03g01757 Chy06g00985 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010882 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31