Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe07g0136 ATGAGACCTCCTCGAGGACGTGGTGGTGGTGGATTTAGAGGTAGGGGTGATGGAGGAGGAAGGGGTGGATTTGGAGGTAGGGGTGAGGGAGGTAGAGGTGGCTTTGGAGGTAGAGGTGGTGGTGGAGGCAGAGGTGGTTTTGGAGGTGGCAGAGGTGCGCCAAGTCGCGGTGGTGGTAGAGGTGGTAGAGGTCGAGGTGCAGGAGGAAGAGGAGGTGGTATGAAAGGTGGAAACAAGGTTGTGGTTGAACCCCACAGACACGAAGGTATTTTCATAGCCAAGGGTAAAGAAGATGCTCTTGTCACAAAGAACATGGTCTCTGGTGAATCCGTTTACAACGAGAAGAGAGTATCCGTGCAGAATGAAGATGGAACAAAAGTTGAATACAGAATTTGGAACCCATTCAGGTCTAAGTTGGCTGCTGCTGTTCTCGGTGGTGTCGATGACATTTGGATTAAACCTGGTGCTCGAGTGTTGTATCTTGGAGCTGCTTCAGGAACAACTGTATCTCATGTCTCAGATGTTGTTGGCCCCAATGGTATAGTGTATGCCGTTGAATTCTCCCACAGAAGTGGTAGAGATTTAGTCAACATGGCTAAGAAGCGCACAAATGTTATACCCATCATTGAAGATGCTAGACACCCAGCCAAGTACCGAATGTTGGTTGGTATGGTAGATGTGATATTTTCAGATGTTGCTCAGCCAGATCAGGTTCGCACTTTTTTTCGTTTTTTGATTTGTTTGTATTATTCTTGTACTTGA 762 47.38 MRPPRGRGGGGFRGRGDGGGRGGFGGRGEGGRGGFGGRGGGGGRGGFGGGRGAPSRGGGRGGRGRGAGGRGGGMKGGNKVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRVSVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPNGIVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQVRTFFRFLICLYYSCT 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1233288 1237085 - Hsped.07g01360.1 Hepe07g0136 573531

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe07g0136 253 Pfam Fibrillarin 82 241 IPR000692 GO:0003723(InterPro)|GO:0006364(InterPro)|GO:0008168(InterPro)
Hepe07g0136 253 CDD AdoMet_MTases 157 249 - -
Hepe07g0136 253 MobiDBLite consensus disorder prediction 1 80 - -
Hepe07g0136 253 SMART Fibrillarin_2 82 251 IPR000692 GO:0003723(InterPro)|GO:0006364(InterPro)|GO:0008168(InterPro)
Hepe07g0136 253 PANTHER RRNA 2-O-METHYLTRANSFERASE FIBRILLARIN 44 239 - GO:0000494(PANTHER)|GO:0003723(PANTHER)|GO:0005730(PANTHER)|GO:0008649(PANTHER)|GO:0031167(PANTHER)|GO:0031428(PANTHER)|GO:0032040(PANTHER)|GO:1990259(PANTHER)
Hepe07g0136 253 FunFam Fibrillarin like 1 77 132 - -
Hepe07g0136 253 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 80 244 IPR029063 -
Hepe07g0136 253 FunFam Mediator of RNA polymerase II transcription subunit 36a 133 184 - -
Hepe07g0136 253 Gene3D Vaccinia Virus protein VP39 133 249 IPR029063 -
Hepe07g0136 253 Gene3D Phosphorylase Kinase; domain 1 77 132 - -
Hepe07g0136 253 ProSitePatterns Fibrillarin signature. 180 194 IPR020813 GO:0003723(InterPro)|GO:0006364(InterPro)|GO:0008168(InterPro)
Hepe07g0136 253 PRINTS Fibrillarin signature 180 197 IPR000692 GO:0003723(InterPro)|GO:0006364(InterPro)|GO:0008168(InterPro)
Hepe07g0136 253 PRINTS Fibrillarin signature 128 147 IPR000692 GO:0003723(InterPro)|GO:0006364(InterPro)|GO:0008168(InterPro)
Hepe07g0136 253 PRINTS Fibrillarin signature 205 234 IPR000692 GO:0003723(InterPro)|GO:0006364(InterPro)|GO:0008168(InterPro)
Hepe07g0136 253 PRINTS Fibrillarin signature 155 176 IPR000692 GO:0003723(InterPro)|GO:0006364(InterPro)|GO:0008168(InterPro)
Hepe07g0136 253 PRINTS Fibrillarin signature 100 119 IPR000692 GO:0003723(InterPro)|GO:0006364(InterPro)|GO:0008168(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe07g0136 K14563 - - csv:101213750 328.176
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g2197 Hepe-Chr2:61385711 Hepe07g0136 Hepe-Chr7:1233288 1.91e-109 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g735 . . Bda05g00085 . Bpe03g00144 . Bma10g01237 Bma14g02052 Cmo16g00115 Cmo18g01289 . . . . Sed07g1007 . Cpe14g00092 Bhi01g01269 Tan01g0216 Cmetu09g1022 . Hepe07g0136 Mch10g1473 . . . . . . . . . . . . Lsi05g01207 . . . Blo07g00395 Blo09g00074 . . . . . . . . . Cma16g00107 Cma18g01262 Car16g00096 Car18g01171 Cpe09g00075 . Bhi12g00810 . . . . . Lcy10g0884 Cla05g00901 Cam05g0985 Cec05g0991 Cco05g0989 Clacu05g0973 Cmu05g0930 Cre05g1015 . Csa03g01736 Chy06g00967 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002978 1 2 2 2 2 1 2 2 2 1 1 2 1 2 2 2 1 3 1 2 2 1 2 2 2 1 3 3 1 1 52