Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe07g0167 ATGTTGGATGGTTCAGCTTCAAAATATGGTTCGATTCCTGGCATTAAACTATCAACTTATAGACGTCGCTTGAACAATGGAAGTGAGGTTGTTCAAAATGACCCAAATCCCCAGCAAATATCCTCACTGAAAAGAAACATGGGTTCTGAGTTCTCTTTAATGATAAAAGAGGCAAAAGCCTTAGGACTGGCGCTTGGTATCCCTTGTCTAGATGGGCTCGAGGAAGCTGAAGCACAATGTGCATTACTAAATTCAGAGTTATTATGTGATGGATGTTTTACTTCAGATTCAGATGTTTTCCTTTTTGGTGGTAGGACAGTATATAGGGATATCTGCCTTGGAGATGGTCATGTAGTTTGTTATGAAATGGCTGACATTGAAAGACAATTAGGATTTGGAAGGAACTCAGTGATTACATTGGCTCTACTTCTTGGCAGTGACTACACGCAAGGCGTTTATGGCATGGGACGTGAATCTGCTTGTCAGATTGTTAAAGCAGTAGGAGATGGTGCTGTCCTTCAAAAAATTGCATCTGAGGGACTGTCTTTCACAAAGAAGGGGAAAAATTCCAAGAAGCAAGGACTTCCCAAGTCTGGGGATGGGCAGTATATGAATAAATGTGATCAGTTTTCACAAGTCATTGATGCCTATTTGAAACCCAAATGCCACTCAGCTGATTCTGATGCTGTGACTAGGGTTCTTGTTCAGCATCCTTTTCAACGCTTCAAACTTCAGCAGATTTGTGCCGAATTTTTCGCATGGCCTCCTGAGAAAACAGATGAGTACATTCTTCCAAAGATAGCAGAAAGAGATCTACGACGATTCGCTAATCTTCGTTCCAACACATCAGAACTCGGTTTCAACATTCCACTTCAAGAGGTACCAGTTAATTGTCCTGTTTCTGTAATCGTCAAGCCCCGAAAAGCCCAGGGCAACGAATGCTACGAGGTTTCTTGGAAAAATATAGATGGACTTGATTCATCTGTTGTACCAGCAGATCTCTTGCAGAGTGCCTGTCCCGAGTTGATTATAGAATTTGAAGAGCAAAAAGCTCAGGGAAGAAAACAAAATAAGCGCAAAACTAAAACAAAGAAGTCGGAGGCTGCTGTGGCTGAACTTGATAAAAGACTCCAAACTCTGTTGCTTGAAATTGAATCTGAAAGCAGGGCCGTTCATAATCTCTCCCATGTTCCAATAGTTTCAGAAGACAGTATTTCTGCTGCTGGTGTTGATGTAATGAACCAAGAGATTTTTCTTGATGTTGAACCAACCTTTGTCGATCATGCTCGTAGTTGTAGCACAGAGAGGATTGAGGTCATCAATCTCTTAAGCCCTTCACCTGCAATGCAAACTCGTAAAGTTTCGAAATTTCAACAGGGAAACAGTCAAAAGATTGATATAATTGATTTGAGTCAAAAGATTGATGTAATTGATTTGAGTGACACAGATACTGATCAGTCACCTGAACATGAGAGAAAAGCAAGAGAGATGAGATCGTTCGTAGCCACTTTAAATGGTAAATGA 1524 40.81 MLDGSASKYGSIPGIKLSTYRRRLNNGSEVVQNDPNPQQISSLKRNMGSEFSLMIKEAKALGLALGIPCLDGLEEAEAQCALLNSELLCDGCFTSDSDVFLFGGRTVYRDICLGDGHVVCYEMADIERQLGFGRNSVITLALLLGSDYTQGVYGMGRESACQIVKAVGDGAVLQKIASEGLSFTKKGKNSKKQGLPKSGDGQYMNKCDQFSQVIDAYLKPKCHSADSDAVTRVLVQHPFQRFKLQQICAEFFAWPPEKTDEYILPKIAERDLRRFANLRSNTSELGFNIPLQEVPVNCPVSVIVKPRKAQGNECYEVSWKNIDGLDSSVVPADLLQSACPELIIEFEEQKAQGRKQNKRKTKTKKSEAAVAELDKRLQTLLLEIESESRAVHNLSHVPIVSEDSISAAGVDVMNQEIFLDVEPTFVDHARSCSTERIEVINLLSPSPAMQTRKVSKFQQGNSQKIDIIDLSQKIDVIDLSDTDTDQSPEHERKAREMRSFVATLNGK 507
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1500896 1504728 - Hsped.07g01670.1 Hepe07g0167 573562

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe07g0167 507 Gene3D - 16 131 - -
Hepe07g0167 507 Gene3D - 297 365 - -
Hepe07g0167 507 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 132 279 IPR036279 -
Hepe07g0167 507 Gene3D - 133 192 - -
Hepe07g0167 507 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 10 420 IPR006084 GO:0017108(PANTHER)
Hepe07g0167 507 FunFam Flap endonuclease GEN-like 1 132 190 - -
Hepe07g0167 507 SUPERFAMILY PIN domain-like 12 147 IPR029060 -
Hepe07g0167 507 CDD CSD 300 350 - -
Hepe07g0167 507 MobiDBLite consensus disorder prediction 481 498 - -
Hepe07g0167 507 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 83 103 IPR006084 -
Hepe07g0167 507 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 62 79 IPR006084 -
Hepe07g0167 507 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 137 152 IPR006084 -
Hepe07g0167 507 Coils Coil 370 390 - -
Hepe07g0167 507 Pfam XPG I-region 66 147 IPR006086 GO:0004518(InterPro)
Hepe07g0167 507 ProSiteProfiles Chromo and chromo shadow domain profile. 298 358 IPR000953 -
Hepe07g0167 507 MobiDBLite consensus disorder prediction 481 507 - -
Hepe07g0167 507 SUPERFAMILY Chromo domain-like 300 352 IPR016197 -
Hepe07g0167 507 SMART xpgineu 63 132 IPR006086 GO:0004518(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe07g0167 K15338 - - csv:101214962 774.622
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe07g0167 Hepe-Chr7:1500896 Hepe02g1867 Hepe-Chr2:29299144 1.44e-25 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g654 . . Bda05g00064 . Bpe03g00291 . Bma10g01219 . . Cmo18g01265 . . . . Sed06g0576 . . Bhi01g01332 Tan01g0264 Cmetu11g0868 . Hepe07g0167 Mch10g0164 . . . . . . . . . . Cone14ag0094 Cone15ag0100 Lsi05g01238 . . Cme06g00987 Blo07g00415 . . . . . . . . . . . Cma18g01242 . Car18g01147 Cpe09g00095 . . . . . . . . Cla05g00870 Cam05g0959 Cec05g0963 Cco05g0963 Clacu05g0945 Cmu05g0902 Cre05g0986 . Csa03g01701 Chy06g00937 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008050 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 2 1 2 1 1 35