Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe07g0192 ATGGAATCTTTTTCAAGTTTTTATGAAGATTATAACTTGTCGAGCTCTGAGAGTAGTAATTGCCGGCGGGTTCTTTTTTCCGATGAGGAGGTTATGTTATTGGCGGCGAGCATTCCGAAGAAGAGGGCCGGCCGGAAGAAGTTTAAGGAGACGAGGCATCCAGTTTACAGAGGAGTCAGGCGGAGGAATTCCGGCAAGTGGGTCTGTGAAGTCAGAGAGCCCAATAAGAAGTCGAGGATTTGGCTTGGCACTTTTCCCACGGCGGAGATGGCGGCGAGAGCCCACGACGTGGCGGCGATGGCGCTTAGAGGTCGGTCTGCTTGTCTCAATTTCGCCGATTCTGCTTGGCGGCTGCCGGTGCCGGCTTCTGCTGACGCCAGGGATATTCAGAAGGCGGCTTCGGAAGCGGCGGAGGCATTCCGGACGGCTGAGTCAGATGGGTCTTCCGTGGATGATTCTAGGCCGGAAAATGAGATGACGGCGGAGACGGCGGCGCTGGAAAACGTGTTGTACATGGATGAGGAGGCAGTTTTTGGGCTGCCGGGATTGTTGGAGGATATGGCTGCGGGGATGATGTTGCCTCCACCTCAGCATTTTCGTGATGACATGGACTTTTACTCTGACGTGTCATTATGGAGCTATTAA 645 53.8 MESFSSFYEDYNLSSSESSNCRRVLFSDEEVMLLAASIPKKRAGRKKFKETRHPVYRGVRRRNSGKWVCEVREPNKKSRIWLGTFPTAEMAARAHDVAAMALRGRSACLNFADSAWRLPVPASADARDIQKAASEAAEAFRTAESDGSSVDDSRPENEMTAETAALENVLYMDEEAVFGLPGLLEDMAAGMMLPPPQHFRDDMDFYSDVSLWSY 214
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1719533 1720454 + Hsped.07g01920.1 Hepe07g0192 573587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe07g0192 214 Gene3D AP2/ERF domain 55 113 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe07g0192 214 PRINTS Ethylene responsive element binding protein signature 56 67 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe07g0192 214 PRINTS Ethylene responsive element binding protein signature 78 94 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe07g0192 214 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 12 214 IPR045277 GO:0003700(InterPro)
Hepe07g0192 214 SMART rav1_2 55 118 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe07g0192 214 FunFam Ethylene-responsive transcription factor 2 54 113 - -
Hepe07g0192 214 ProSiteProfiles AP2/ERF domain profile. 55 112 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe07g0192 214 CDD AP2 56 114 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe07g0192 214 SUPERFAMILY DNA-binding domain 55 114 IPR016177 GO:0003677(InterPro)
Hepe07g0192 214 Pfam AP2 domain 54 104 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe06g1290 Hepe-Chr6:62893022 Hepe07g0192 Hepe-Chr7:1719533 2.69e-82 dispersed
Hepe06g1584 Hepe-Chr6:66597853 Hepe07g0192 Hepe-Chr7:1719533 3.27e-36 dispersed
Hepe06g1585 Hepe-Chr6:66641665 Hepe07g0192 Hepe-Chr7:1719533 5.20e-64 dispersed
Hepe07g0192 Hepe-Chr7:1719533 Hepe10g0364 Hepe-Chr10:3964166 5.08e-32 dispersed
Hepe07g0191 Hepe-Chr7:1706803 Hepe07g0192 Hepe-Chr7:1719533 4.83e-31 tandem
Hepe07g0192 Hepe-Chr7:1719533 Hepe07g0193 Hepe-Chr7:1724985 1.05e-147 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55881 PF00847 AP2 1.10E-15 CL0081 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe07g0192 - - - 0.0