Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe07g0193 ATGGAATCTTTTTCAAGTTTTTATGAAGATTATAACTTGTCGAGCTCTGAGAGTAGTAATTGCCGGCGGGTTCTTTTTTCCGATGAGGAGGTTATGTTGTTGGCGGCGAGCATTCCGAAGAAGAGGGCCGGCCGGAAGAAGTTTAAGGAGACGAGGCATCCAGTTTACAGGGGAGTCAGGAGGAGGAATTCCGGCAAGTGGGTCTGTGAAGTCAGAGAGCCCAATAAGAAGTCGAGGATTTGGCTTGGCACTTTTCCCACGGCGGAGATGGCGGCGAGAGCCCACGACGTAGCGGCGATGGCGCTTAGAGGTCGGTCTGCTTGTCTCAATTTCGCCGATTCTGCTTGGCGGCTGCCGGTGCCGGCTTCTGCTGACGCCAGGGATATTCAGAAGGCGGCTTCGGAAGCGGCGGAGGCATTCCGGACGGCTGAGTCAGATGGGTCTTCCGTTGATGATTCAAAGCCGGAAAATGAGATGACGGCAGAGACGGCGGCGCCGGAAAACGTGTTGTACATGGATGAGGATGCAGTTTTTGGGCTGCCGGGATTGTTGGAGGATATGGCTGCAGGGATGATGTTGCCTCCACCTCAGCATTTTCGTGATGACATGGATTTTTATGCTGACGTGTCATTATGGAGCTATTAA 645 53.02 MESFSSFYEDYNLSSSESSNCRRVLFSDEEVMLLAASIPKKRAGRKKFKETRHPVYRGVRRRNSGKWVCEVREPNKKSRIWLGTFPTAEMAARAHDVAAMALRGRSACLNFADSAWRLPVPASADARDIQKAASEAAEAFRTAESDGSSVDDSKPENEMTAETAAPENVLYMDEDAVFGLPGLLEDMAAGMMLPPPQHFRDDMDFYADVSLWSY 214
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1724985 1726080 + Hsped.07g01930.1 Hepe07g0193 573588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe07g0193 214 Gene3D AP2/ERF domain 55 113 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe07g0193 214 PRINTS Ethylene responsive element binding protein signature 56 67 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe07g0193 214 PRINTS Ethylene responsive element binding protein signature 78 94 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe07g0193 214 SMART rav1_2 55 118 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe07g0193 214 MobiDBLite consensus disorder prediction 140 162 - -
Hepe07g0193 214 FunFam Ethylene-responsive transcription factor 2 54 113 - -
Hepe07g0193 214 ProSiteProfiles AP2/ERF domain profile. 55 112 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe07g0193 214 CDD AP2 56 114 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe07g0193 214 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 12 214 IPR045277 GO:0003700(InterPro)
Hepe07g0193 214 SUPERFAMILY DNA-binding domain 55 114 IPR016177 GO:0003677(InterPro)
Hepe07g0193 214 Pfam AP2 domain 54 104 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe07g0191 Hepe-Chr7:1706803 Hepe07g0193 Hepe-Chr7:1724985 2.43e-31 dispersed
Hepe07g0193 Hepe-Chr7:1724985 Hepe10g0364 Hepe-Chr10:3964166 5.08e-32 dispersed
Hepe07g0192 Hepe-Chr7:1719533 Hepe07g0193 Hepe-Chr7:1724985 1.05e-147 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55882 PF00847 AP2 1.10E-15 CL0081 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe07g0193 - - - 0.0