Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe07g0203 ATGGTGAGAGGAAAAGTAGAAATGAAACGGATAGAAAATGCGACAAGTCGACAAGTAACATTCTCAAAGCGAAGAAATGGAGTATTGAAGAAAGCGTATGAACTCTCTGTGCTGTGTGATGCTGAAGTTGCAGTCATCATTTTCTCACAAAAAGGCCGTCTCTATGAATTTGCAAGCTCTGATATGGGCAGGATTGTAGAGCGCTATCGCAAATGTGCAAGAGATGGGAAGAACAGTGCCAAATTTGATAGACAACTCCAATTACAGCAATTAAGGGTTGAAGCTGAAAGCATAAATGAGAAGATCGAGTTTATGCAACTTTCTCAACGGAAGCTGTTGGGATATGGACTGGATTCTTGTTCCCTTGATGAACTTCAAGTACTTGATGCTCAGCTTCAGCGAAGTTTGTTCCAAATTAGAGCCAGAAAGGCTCAGCTATACAAGGAGCAGATTCAACAACTAGAAGAAAAGGAAAGACTCCTGTTAGAAGAGAACAAGAAATTGTCTTTAAAGGTGAATTTACTCTTTCGAGCTTATTTTAATTTTTACTGTGTTGGAACTGTTTTTGTTCAAATTTCTGAATGTTAG 588 38.78 MVRGKVEMKRIENATSRQVTFSKRRNGVLKKAYELSVLCDAEVAVIIFSQKGRLYEFASSDMGRIVERYRKCARDGKNSAKFDRQLQLQQLRVEAESINEKIEFMQLSQRKLLGYGLDSCSLDELQVLDAQLQRSLFQIRARKAQLYKEQIQQLEEKERLLLEENKKLSLKVNLLFRAYFNFYCVGTVFVQISEC 195
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1805681 1811633 + Hsped.07g02030.1 Hepe07g0203 573598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe07g0203 195 Coils Coil 137 171 - -
Hepe07g0203 195 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Hepe07g0203 195 SUPERFAMILY SRF-like 3 85 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe07g0203 195 Gene3D - 14 92 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe07g0203 195 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 172 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Hepe07g0203 195 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe07g0203 195 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe07g0203 195 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe07g0203 195 Coils Coil 88 108 - -
Hepe07g0203 195 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe07g0203 195 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe07g0203 195 FunFam Agamous-like MADS-box protein AGL13 13 79 - -
Hepe07g0203 195 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe07g0203 195 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe07g0203 195 Pfam K-box region 85 172 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Hepe07g0203 195 CDD MADS_MEF2_like 3 78 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe07g0203 Hepe-Chr7:1805681 Hepe08g0613 Hepe-Chr8:5370745 1.86e-39 dispersed
Hepe07g0203 Hepe-Chr7:1805681 Hepe07g0206 Hepe-Chr7:1840810 5.12e-38 proximal
Hepe03g0476 Hepe-Chr3:7287433 Hepe07g0203 Hepe-Chr7:1805681 7.85e-51 wgd
Hepe05g1897 Hepe-Chr5:69311646 Hepe07g0203 Hepe-Chr7:1805681 1.82e-47 wgd
Hepe06g1597 Hepe-Chr6:66778398 Hepe07g0203 Hepe-Chr7:1805681 1.99e-46 wgd
Hepe06g1313 Hepe-Chr6:63233347 Hepe07g0203 Hepe-Chr7:1805681 1.82e-53 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55884 PF01486 K-box 2.40E-21 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe07g0203 - - - 0.0