Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Hepe07g0206 | ATGGGAAGGGGAAAAGTTGTTCTTGAGAGAATAGAGAACAAAGTGAATCGTCAAGTAACATTCTCAAAGCGAAGAAATGGTTTACTGAAGAAAGCTTATGAACTCTCTGTGCTTTGTGATGTTGACGTTGCTCTCATCATCTTCTCTACTCGTGGAAAGCTCTTTGAATTTGGCAGCACTGACATGAACAAGATCCTTGAGAGGTATCACCAGCGATGTTATACCTCTGGATCAACCACCAACCTTGATGAGAGTGACATCCAGCTAGAGGAGGTGACAAAGCTGAGAGCCAAATATGAATCTCTTCAGCGTTCCCATAGGAACTTTCTTGGAGAAGAACTTGAACCACTGAACTTAAAAGAGTTGCACAGTCTTGAGAAACAGTTGGACAAAACTCTTTCACAAACTAGACAAAGAAAGGCTGAAATAATGCTTCAAAGATTGGCAGAGTTGCGCAAAATGGAGCAGGACCTTGGAGATCAAAATACTCAGCTGAAGTCAAAGCTTGAAGAAGGACAACAATGTATGCAAGAAAACGAAGATGTGCAGGGAGATCCAAACAATCAACTACTTAATTATGAAGATGTGGCAGACCCAAACATGATGAGCAGCAGGTACTTTGATGCCCAAGAAGAAGAAGAAGAAGCCAGGGCCATGATGGGAGCTGGGAGTAACCTAATCCCAGAATGGCTCCTATGA | 699 | 42.49 | MGRGKVVLERIENKVNRQVTFSKRRNGLLKKAYELSVLCDVDVALIIFSTRGKLFEFGSTDMNKILERYHQRCYTSGSTTNLDESDIQLEEVTKLRAKYESLQRSHRNFLGEELEPLNLKELHSLEKQLDKTLSQTRQRKAEIMLQRLAELRKMEQDLGDQNTQLKSKLEEGQQCMQENEDVQGDPNNQLLNYEDVADPNMMSSRYFDAQEEEEEARAMMGAGSNLIPEWLL | 232 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 1840810 | 1845797 | - | Hsped.07g02060.1 | Hepe07g0206 | 573601 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Hepe07g0206 | 232 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 186 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
| Hepe07g0206 | 232 | FunFam | MADS-box transcription factor MADS-MC | 13 | 85 | - | - | |
| Hepe07g0206 | 232 | Gene3D | - | 13 | 94 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Hepe07g0206 | 232 | Coils | Coil | 148 | 171 | - | - | |
| Hepe07g0206 | 232 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Hepe07g0206 | 232 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Hepe07g0206 | 232 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Hepe07g0206 | 232 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Hepe07g0206 | 232 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Hepe07g0206 | 232 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Hepe07g0206 | 232 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Hepe07g0206 | 232 | CDD | MADS_MEF2_like | 2 | 71 | IPR033896 | GO:0000977(InterPro)|GO:0045944(InterPro) | |
| Hepe07g0206 | 232 | Pfam | K-box region | 89 | 170 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
| Hepe07g0206 | 232 | ProSiteProfiles | K-box domain profile. | 85 | 175 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
| Hepe07g0206 | 232 | SUPERFAMILY | SRF-like | 2 | 89 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Hepe07g0206 | Hepe-Chr7:1840810 | Hepe07g2444 | Hepe-Chr7:68775594 | 4.72e-50 | dispersed | |
| Hepe07g0203 | Hepe-Chr7:1805681 | Hepe07g0206 | Hepe-Chr7:1840810 | 5.12e-38 | proximal |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 55885 | PF01486 | K-box | 1.70E-23 | No_clan | Hepe | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Hepe07g0206 | K09264 | - | csv:101212022 | 355.525 |