Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe07g0228 ATGGAGGAGAAGGAAACTGGAGTTTCTAGGTTTACAGTTACGAATGACGAAGCCCTAGAGAGTTTCCAGTTAGCTCCAAAAACAGAAACCCTAAAACCAACCGATGAGCCTAAGGTCACTGCTGCTACACCACCACCGGGGTTCCCGGCGGCGGCGGCTGATAAACCACCGGCGAGTGTGGCGGTTTCTAGTACGGAAATAAAGAAGAAGAGAGGGAGACCGAGAAAGTACGGACCGGACGGGAAGCGGTCACTGACTTTGGCGTTGTCTCCGATGCCGATATCGGCATCAATTCCACTGACCGGAGAGTTTCCGAATTGGAAACGAGATAACGAGATGTCTCAAGCGACAATCAAGAAGTCACAGTCACAGCCACAGCCACAGAGATTCGAGTTTGAGAATCCCGGTCAGAAACTTGCATACTCTGTTGGTGCAAATTTTACTCCCCATGTGATCACTGTCAATGCTGGAGAGGACATTACGATGAAGGTTATGTCTTTCTCTCAGCAAGAATCCCGAGCTATTTGTATTCTTTCTGCAAATGGCACAATTTCAAATGTTACACTTCGACAGGCAACTTCTTCCGGAGGTACTTTAACGTATGAGGGTCGTTTTGAAATACTCGCATTGACCGGATCATATATGCCCACACAGAATGGAGCTACGAAGAGCAGATGTGGTGGGATGAGCGTGTCGCTAGCGGGTCAAGATGGACGAGTTGTTGGTGGAGGACTTGCTGGTTTGTTGGTAGCTGCTGGTCCTGTGCAAGTTGTGGTTGGTAGTTTCCTTCCGGGTCACCAGCAAGAACAGAAGCCAAAGAAGCCTAGAAATGAGTCCACAACCATTTTCTTTCCTCCCATCAACACCATCACTGGTGAAGAAATGAAGGCGATGTACACTGGTGGTAACAAGCCTAATCACACGACACCGTCCTATCAAGACCATAATCCACCCTCGTCCAGCCCGGTGACAGGCTTCAAAATCTCCTCCACTGACAACTTACCTCTATCTGAACAAGAACCCAAAACACAAAGTCAATCAAACTGTGAGGTTTCTTGTTGA 1062 48.21 MEEKETGVSRFTVTNDEALESFQLAPKTETLKPTDEPKVTAATPPPGFPAAAADKPPASVAVSSTEIKKKRGRPRKYGPDGKRSLTLALSPMPISASIPLTGEFPNWKRDNEMSQATIKKSQSQPQPQRFEFENPGQKLAYSVGANFTPHVITVNAGEDITMKVMSFSQQESRAICILSANGTISNVTLRQATSSGGTLTYEGRFEILALTGSYMPTQNGATKSRCGGMSVSLAGQDGRVVGGGLAGLLVAAGPVQVVVGSFLPGHQQEQKPKKPRNESTTIFFPPINTITGEEMKAMYTGGNKPNHTTPSYQDHNPPSSSPVTGFKISSTDNLPLSEQEPKTQSQSNCEVSC 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2171780 2176691 + Hsped.07g02280.1 Hepe07g0228 573623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe07g0228 353 CDD DUF296 148 262 IPR005175 -
Hepe07g0228 353 Gene3D - 149 278 - -
Hepe07g0228 353 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 41 312 IPR039605 GO:0003680(InterPro)
Hepe07g0228 353 MobiDBLite consensus disorder prediction 302 353 - -
Hepe07g0228 353 MobiDBLite consensus disorder prediction 266 353 - -
Hepe07g0228 353 Pfam Plants and Prokaryotes Conserved (PCC) domain 149 262 IPR005175 -
Hepe07g0228 353 SUPERFAMILY AF0104/ALDC/Ptd012-like 146 268 - -
Hepe07g0228 353 ProSiteProfiles PPC domain profile profile. 144 288 IPR005175 -
Hepe07g0228 353 MobiDBLite consensus disorder prediction 1 83 - -
Hepe07g0228 353 FunFam AT-hook motif nuclear-localized protein 1-like 149 280 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe06g1177 Hepe-Chr6:61204959 Hepe07g0228 Hepe-Chr7:2171780 1.05e-81 dispersed
Hepe07g0228 Hepe-Chr7:2171780 Hepe08g1523 Hepe-Chr8:19506738 4.35e-60 dispersed
Hepe06g1336 Hepe-Chr6:63565499 Hepe07g0228 Hepe-Chr7:2171780 1.60e-99 transposed
Hepe03g0464 Hepe-Chr3:7115765 Hepe07g0228 Hepe-Chr7:2171780 9.80e-23 wgd
Hepe05g1875 Hepe-Chr5:69037876 Hepe07g0228 Hepe-Chr7:2171780 3.56e-83 wgd
Hepe06g1625 Hepe-Chr6:67129009 Hepe07g0228 Hepe-Chr7:2171780 8.20e-87 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe07g0228 - - - 0.0