Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe07g0246 ATGGAGAGGAGTCTTGGAGTGTTGTTTTTTCTTCAGTTCTTTTTACTATCTTCTTCTTCTGCACCCTTTTCCAAGCCTGCCTCTAATGGCATTGATTGGTGGTGTACAAAAACCACATACCCTGAAACCTGCAAGTATTTCTTCAGCCATGGCAGCAAGGCTGCTCCCAAAGATATGTCTGAGTTCAAGAAAATGGTGATCCAATTTGCCATGGAGAGAGCTCTTACTGCCGAGACCAACACTAAGGGTGTCGGTACCAAGTGCCGAAATAAGAAGGAAAAGGCTGCTTGGGCTGATTGTTTGGAGCTCTACCAAAACACCATCCTGCAGCTCAACAACACTCTAGATTCCTCTACAAAATGTACCGAGTTTGATATCCATACCTGGCTCAGTACTGCCCTAACCAACCTTGAAACGTGCCGCACCGGGTTTGCTGAGCTTAATGTTTCGGACTATGTATTGCCACTGATCATGTCGAACAATGTCACAAAGCTGATAAGCAACAGCTTGGCAGTTAACAATGCTTCAGCTTGGCCGGGGAAAGAGACATATAAAAAGGGTTTTCCAAGTTGGCTTTCAGGTGGTGACAGGAAGCTACTGCAGTCATCTTCAACAAAGGCGGACCTTGTGGTGGCTCAGGACGGATCTGGTAACTATAAGACGGTTGGAGTGGCTCTAGAGGAAGCTGCAAAAAGGAAGACAGATGGGAGATTTGTTATACAAGTAAAGAGGGGGATTTACGAAGAAAACCTTGAGATTGGAAGTAAGATGAAGAATATAATGCTCGTTGGAGATGGAATGAGGTTTACCTTCATTACTGGTAATAGAAGTGTTGTAGGAGGCTCCACCACTTTCAATTCTGCTACTGTTGCGGTGACTGGTGAAGGATTTATAGCTCAAGGCATCACATTCCGTAACACTGCTGGTCCTGAAAACCATCAAGCAGTTGCTCTTCGATCGGGCGCAGATCTTTCTGTCTTCTACCGCTGTGCCTTTGAAGGGTATCAGGACACCCTCTATGTTCATTCGCAAAGACAATTCTATAAGGAGTGTTATGTTTACGGCACGGTAGATTTTATATTCGGCAATGCTGCAGTTGTTCTACAGAACTGCATGATTTATGCAAGGCGGCCAATGAATGGTCAGAAGAATACAGTCACTGCTCAAGGACGGACTGATCCAAATCAAAATACTGGCATTTCAATTCACAACTCGCGAGTCATGGCCACGGATGACCTAAAACCAGTGGAGAGCACAGTAAAAACCTACTTAGGAAGGCCATGGAAGGAGTACTCTCGAACAGTTTTCATGAAAACTTACCTAGATAGTTTGATTGATCCAGCAGGTTGGTTGGAGTGGGATGGTGACTTTGCACTGAATACTTTATATTATGGAGAGTATATGAATATTGGTCCTCGTTCATCAACTAGCCAGAGAGTGAACTGGAAAGGTTACCATGTTATAAGCAATTCAACAGAGGCATCGGAGTTCACTGTCCAAAATTTCATTGCAGGGCAATCATGGTTGCCAGGCACACAGGTCCCATTTACTCCTGGACTCTAG 1563 44.59 MERSLGVLFFLQFFLLSSSSAPFSKPASNGIDWWCTKTTYPETCKYFFSHGSKAAPKDMSEFKKMVIQFAMERALTAETNTKGVGTKCRNKKEKAAWADCLELYQNTILQLNNTLDSSTKCTEFDIHTWLSTALTNLETCRTGFAELNVSDYVLPLIMSNNVTKLISNSLAVNNASAWPGKETYKKGFPSWLSGGDRKLLQSSSTKADLVVAQDGSGNYKTVGVALEEAAKRKTDGRFVIQVKRGIYEENLEIGSKMKNIMLVGDGMRFTFITGNRSVVGGSTTFNSATVAVTGEGFIAQGITFRNTAGPENHQAVALRSGADLSVFYRCAFEGYQDTLYVHSQRQFYKECYVYGTVDFIFGNAAVVLQNCMIYARRPMNGQKNTVTAQGRTDPNQNTGISIHNSRVMATDDLKPVESTVKTYLGRPWKEYSRTVFMKTYLDSLIDPAGWLEWDGDFALNTLYYGEYMNIGPRSSTSQRVNWKGYHVISNSTEASEFTVQNFIAGQSWLPGTQVPFTPGL 520
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2340813 2342874 + Hsped.07g02460.1 Hepe07g0246 573641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe07g0246 520 Pfam Pectinesterase 208 505 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Hepe07g0246 520 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 29 174 IPR035513 -
Hepe07g0246 520 Gene3D Invertase/pectin methylesterase inhibitor family protein 27 175 IPR035513 -
Hepe07g0246 520 PANTHER PECTINESTERASE 18 510 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Hepe07g0246 520 Gene3D - 202 520 IPR012334 -
Hepe07g0246 520 NCBIfam pectinesterase inhibitor domain 1 174 IPR006501 GO:0004857(InterPro)
Hepe07g0246 520 ProSitePatterns Pectinesterase signature 2. 353 362 IPR033131 -
Hepe07g0246 520 FunFam Pectinesterase 202 520 - -
Hepe07g0246 520 Pfam Plant invertase/pectin methylesterase inhibitor 31 172 IPR006501 GO:0004857(InterPro)
Hepe07g0246 520 SMART PMEI_2 26 172 IPR006501 GO:0004857(InterPro)
Hepe07g0246 520 SMART complete 242 408 IPR006633 -
Hepe07g0246 520 CDD PMEI-like_3 33 175 - -
Hepe07g0246 520 SUPERFAMILY Pectin lyase-like 204 519 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe07g0246 Hepe-Chr7:2340813 Hepe07g1125 Hepe-Chr7:20386608 8.75e-190 dispersed
Hepe08g1614 Hepe-Chr8:23819156 Hepe07g0246 Hepe-Chr7:2340813 4.18e-76 dispersed
Hepe04g1782 Hepe-Chr4:72746132 Hepe07g0246 Hepe-Chr7:2340813 1.66e-150 transposed
Hepe06g1103 Hepe-Chr6:59630630 Hepe07g0246 Hepe-Chr7:2340813 2.04e-13 transposed
Hepe06g1367 Hepe-Chr6:63939918 Hepe07g0246 Hepe-Chr7:2340813 2.89e-257 transposed
Hepe05g1854 Hepe-Chr5:68844978 Hepe07g0246 Hepe-Chr7:2340813 1.37e-201 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe07g0246 K01051 - csv:101211449 936.791