Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe07g0267 ATGCCTGATTACAGAGCTCACCCTCCTCGCTCCGGCGCCGGAATCGTCAGAAGTATCCAATTGGAGAACTTCATGTGTCATAGCAATTTGTACATTGAGTTTGGCGAGTGGCTCAATTTCATTACTGGGCAAAACGGAAGTGGTAAGAGTGCTATCCTGACTGCTTTATGTGTTGCATTCGGCTGTCGAGCTAAAGGAACCCAGAGGGCGTCAACGTTGAAGGATTTTATTAAAACTGGTTGCAGTCATGCTGTCATCCATGTTGAATTGAAAAATAATGGGGAGGATGCTTTTAAGCATGGAATATATGGTAATGTTATAATCATAGAGAGAAGGATTTCCGAAACCACCAGTGCCATTGTTTTGAAGGATTCTCAAGGAAAAAAGGTTGCCAGTCGGAGGAGTGAACTACGAGAGCTAGTTGAACATTTTAATATAGATGTTGAGAATCCATGTGTAATAATGAGTCAGGACAAAAGTAGAGAGTTTCTGCATTCTGGGAACGACAAAGACAAATTTAAGTTCTTCTTCAAGGCAACTCTTCTTCAGCAAGTTGATGATCTGTTGAAAAACGTTTTTGATCAATTGAGATCTGCGAATGCTCTTGTTGATGACTTGGAGTCTACCATACGACCTGTAGAGAAGGAACTAAATGAGCTGCGAGGAAAAATTAAAAACATGGAGCATGTAGAAGAAATCTCTCAACAGGTTCAACAATTAAAGAAAAAGCTTGCTTGGTCATGGGTATATGATGTAGACAAACAGCTTCAGGAGCAAAGTGCAAAAATAGTAAAGCTCCAAGATCGCATTCCTATTTGTCGAGCAAAAATTGATCGTCAACTGGGTCTGGCGGAAAAATTAAGAGAGCGCTTTATCGAGAAGAAGGCTCAAATTGCAAGCATGATGGAAAAAACTTCAGAAGTGAGAAGAATGAAGGATGAATTGCAAGAAACTCTTTCGTTGGCAACAAGAGAGAAGCTCGGACTTGAAGAGGAGCATGGCCGCAAAATGAACTACATCCAAAATATGGTAAAGCGTAATAGGCTGCTTGAGCACCAAGTTCAAGATATTCATGAGCAGCACATAAGAAATACACAGGCTGAAGAATCTGAAATTGAGGAAAAGTTGAAGGAACTCGAATTGGAGACTGAGGCTGCTAAGTCAACAGTAACGAGGTTGAAGGAGGAGGAGAATGCCTTATTGGATAGCCTATACAGCGGGAGAACTGAAATAAAAAAGATTGCTGAAGAGATCGAAGGTTATGAGAAAAAGCATTACGATTTTTCTCACTCTATTCGAGAGCTTAGGAAGCATCAAACAAACAAGGTCACAGCTTTTGGAGGTGATAGAGTCATTCAATTATTACGTGCAATTGAGAGACAACATCAAAGATTCAAGAAACCTCCCATTGGTCCAATTGGTTCCCATCTGAATTTGGTCAATGGTGACATATGGGCTCTTGCTGTTGAAAATGCCATTGGGAAGTTGCTCAATGCTTTCATCGTGACCAATCATCGAGATTCTCTTCTTTTGAGAGGATGTGCAAATGAAGCTAATTATAAGCAACTCCCAATTATCATCTATGACTTTTCAAGACCACTGTTACATATTCCAGCTCACATGCTTCCTCAAACAAAGCACCCTACAGCCCTTTCAGTCATTCGTTCTGAAAACCATACTGTCATCAATGTTTTGATAGACGAGGGTGATGCTGAAAGGCAAGTGCTCGTTAAAGATTATGATGTGGGTAAATCAGTCGCATTTGACCAACGGATCTCAAATCTCAAGGAGGTCTTTACATTAGATGGATACAAAATGTTTTCTCGTGGTTCTGTTCAGACAATTCTTCCCCCATTTAAAAGACCTAGAAGTGGCAGACTTTGTAGTTCTTTTGATGACCAGATTAAAAGTCTTGAAAAAGATGCATTGAATGTAAAAGAAGAAGTTGGACAATGTAGGAAGAGGAAGAGAGCTGCAGAAGAAGAACTCCGGGATCTTGAAGAGAACCTAAACATTGCGAAGAGGAGGTGTCGGAGTGCAGAGCGCGTTTTAATGTCCAAAAATTTGGAGCTGCAAGATTTACGGAAGTCACAAGTTGCTGAAACTAGTTCATTACCTTCATCAAATGTTGACGAGCTTAATCAAGAAATTTCTAAAATCCAAGAGGAGATACAAGAGAATAAGTTGCTTCTGGAAAAGTTTAGAGTTAGAATGAAAGAAGCGGAAGCAAAGGCAAAAGATCTTAAAGTATCATTTGAGAATCTATGTGAGTCAGCGAAAGGAGAAATTGATGCATTTGAAGAAGCTGAGAGATATATGTTGCAGATTGAACGAGAACTGCATTCTGCAGAAAAGGAGAAGGATCATTATGAAGGTATTATGACTAACAAGGTCCTTTTTGATATCAAAGAGGCAGAGAGACAATTTCAGGAGCTTGAGCACCATCGTAAGGAGAGTTACAGTAAGGCTTCAATAATATGTCCTGAGAGTGAAATTGAGGCTTTAGGTGATTGGGATGGGAGCACACCCGAACAACTCAGTGCACACTTAACGAGGCTAAATCAGAGACTTAATAATGAGACCCGACGGTATTCTGAATCTCTGGAAGACCTGAGGATAATGTATGAGAAAAAGGAGCGTACAATTATAAGAAAACAACAGACTTACAAAAGTTTTAAAGAGAAGTTGAATGCTTGCCAGAAAGCTCTTGAGCAACGGTGGAACAAGTTTGAAAGGAATGCTAGTCTTTTGAAGCGCCAATTGACTTGGCAATTCAATGGCCATTTAAGAAAAAAGGGGATCAGTGGACATATAAAAGTTAATTACGAGGAAAAGACCCTCTCAGTTGAGGTGAAGATGCCCCAAGATGCATCCAGCAGTTCTGTTCGTGATACCCGTGGACTTTCAGGTGGAGAACGGTCATTTTCAACTCTATGCTTCACTTTGGCATTGCACGAAATGACAGAAGCCCCGTTTCGAGCCATGGATGAGTTTGATGTGTTCATGGATGCAGTAAGTCGGAAAATTAGCTTAGACACTCTTGTGGATTTTGCACTGGCACAAGGTTCCCAATGGATATTTATCACGCCTCACGAAATCGGCATGGTAAAACAAGGAGAACGAATCAAGAAGCAGCAAATGGCAGCTCCTCGATCATGA 3159 40.65 MPDYRAHPPRSGAGIVRSIQLENFMCHSNLYIEFGEWLNFITGQNGSGKSAILTALCVAFGCRAKGTQRASTLKDFIKTGCSHAVIHVELKNNGEDAFKHGIYGNVIIIERRISETTSAIVLKDSQGKKVASRRSELRELVEHFNIDVENPCVIMSQDKSREFLHSGNDKDKFKFFFKATLLQQVDDLLKNVFDQLRSANALVDDLESTIRPVEKELNELRGKIKNMEHVEEISQQVQQLKKKLAWSWVYDVDKQLQEQSAKIVKLQDRIPICRAKIDRQLGLAEKLRERFIEKKAQIASMMEKTSEVRRMKDELQETLSLATREKLGLEEEHGRKMNYIQNMVKRNRLLEHQVQDIHEQHIRNTQAEESEIEEKLKELELETEAAKSTVTRLKEEENALLDSLYSGRTEIKKIAEEIEGYEKKHYDFSHSIRELRKHQTNKVTAFGGDRVIQLLRAIERQHQRFKKPPIGPIGSHLNLVNGDIWALAVENAIGKLLNAFIVTNHRDSLLLRGCANEANYKQLPIIIYDFSRPLLHIPAHMLPQTKHPTALSVIRSENHTVINVLIDEGDAERQVLVKDYDVGKSVAFDQRISNLKEVFTLDGYKMFSRGSVQTILPPFKRPRSGRLCSSFDDQIKSLEKDALNVKEEVGQCRKRKRAAEEELRDLEENLNIAKRRCRSAERVLMSKNLELQDLRKSQVAETSSLPSSNVDELNQEISKIQEEIQENKLLLEKFRVRMKEAEAKAKDLKVSFENLCESAKGEIDAFEEAERYMLQIERELHSAEKEKDHYEGIMTNKVLFDIKEAERQFQELEHHRKESYSKASIICPESEIEALGDWDGSTPEQLSAHLTRLNQRLNNETRRYSESLEDLRIMYEKKERTIIRKQQTYKSFKEKLNACQKALEQRWNKFERNASLLKRQLTWQFNGHLRKKGISGHIKVNYEEKTLSVEVKMPQDASSSSVRDTRGLSGGERSFSTLCFTLALHEMTEAPFRAMDEFDVFMDAVSRKISLDTLVDFALAQGSQWIFITPHEIGMVKQGERIKKQQMAAPRS 1052
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2675351 2690035 - Hsped.07g02670.1 Hepe07g0267 573662

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe07g0267 1052 Coils Coil 802 822 - -
Hepe07g0267 1052 Coils Coil 362 396 - -
Hepe07g0267 1052 Coils Coil 189 223 - -
Hepe07g0267 1052 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 16 1042 IPR027417 -
Hepe07g0267 1052 SUPERFAMILY Smc hinge domain 427 611 IPR036277 GO:0005515(InterPro)|GO:0005524(InterPro)|GO:0005694(InterPro)|GO:0051276(InterPro)
Hepe07g0267 1052 Coils Coil 312 332 - -
Hepe07g0267 1052 Coils Coil 340 360 - -
Hepe07g0267 1052 Pfam RecF/RecN/SMC N terminal domain 16 1045 IPR003395 -
Hepe07g0267 1052 Coils Coil 766 793 - -
Hepe07g0267 1052 Coils Coil 628 683 - -
Hepe07g0267 1052 Coils Coil 850 888 - -
Hepe07g0267 1052 Gene3D - 805 1047 IPR027417 -
Hepe07g0267 1052 Gene3D - 16 267 IPR027417 -
Hepe07g0267 1052 Coils Coil 710 758 - -
Hepe07g0267 1052 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6 12 1050 - GO:0000724(PANTHER)|GO:0003684(PANTHER)|GO:0003697(PANTHER)|GO:0005634(PANTHER)|GO:0030915(PANTHER)|GO:0035861(PANTHER)
Hepe07g0267 1052 Coils Coil 284 304 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe07g0267 K22804 - - csv:101208493 1828.91
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g1771 Hepe-Chr3:74605876 Hepe07g0267 Hepe-Chr7:2675351 1.38e-16 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe03g1771 . 4 1044 Structural Maintenance of Chromosomes family AT5G15920 67.4 0.0e+00 1375.9
Hepe07g0267 . 10 1052 Structural Maintenance of Chromosomes family AT5G07660 63.3 0.0e+00 1256.1
Hepe07g0267 . 10 1052 Structural Maintenance of Chromosomes family AT5G61460 66.4 0.0e+00 1330.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010088 0 2 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 3 1 1 1 1 1 2 32