Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe07g0289 ATGTTTCAAGGGTTTGTTTTCGGGGTAAAAGACGTGTACGGTCACGATTACACCGTCGCGTCTCTGCCGGAGTTCACGATCAGCCACTTGACGGAACAAATCGACGACAAGGCGATGTTCAGCTCCGACGAGTTTCGAATGTACGCTTACAAGATCCGACGGTGTACAAGAACCCGCAGCCACGATTGGACTGACTGTCCGTACGCCCACCGTGGCGAGAAGGCGCAACGCCGTGACCCACGGCGTTTCAATTACTCCGCCGTGGCTTGCCCGGCTTTCCGCACGGGCAGCTGCCCGAAGGGCGAAGATTGTGAATTTGCTCATGGGGTTTTCGAGTTCTGGCTCCACCCTGACCGGTACCGGACCCGGCCCTGCAATGCCGGCCGATCATGCCAACGGAAAGTTTGTTTTTTTGCGCACACGCCGGACGAGCTCCGACCGGAGACTGAACATAATTTTCATGATGATGCTTTCCGGACTAGTGCGGCGGTGGCCACTGTTGAAGCTCCGGCTGTGAGGGCGAACGGCGGCGTATCGGAAATTCCGGCAAGGGAGAGCGGCGGCGGACTGGTAAATGAACGGAATTTTGGATTATTAGATGTGTCGGATTTGGAGTTGCCGCATATCGATTGGATATCGGAATTGTTGCAGTAA 654 55.5 MFQGFVFGVKDVYGHDYTVASLPEFTISHLTEQIDDKAMFSSDEFRMYAYKIRRCTRTRSHDWTDCPYAHRGEKAQRRDPRRFNYSAVACPAFRTGSCPKGEDCEFAHGVFEFWLHPDRYRTRPCNAGRSCQRKVCFFAHTPDELRPETEHNFHDDAFRTSAAVATVEAPAVRANGGVSEIPARESGGGLVNERNFGLLDVSDLELPHIDWISELLQ 217
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2924467 2925761 - Hsped.07g02890.1 Hepe07g0289 573684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe07g0289 217 PANTHER UNKEMPT FAMILY MEMBER 36 152 IPR045234 -
Hepe07g0289 217 SMART c3hfinal6 84 110 IPR000571 GO:0046872(InterPro)
Hepe07g0289 217 SMART c3hfinal6 119 142 IPR000571 GO:0046872(InterPro)
Hepe07g0289 217 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 88 109 IPR000571 GO:0046872(InterPro)
Hepe07g0289 217 Gene3D - 81 154 - -
Hepe07g0289 217 SUPERFAMILY CCCH zinc finger 83 114 IPR036855 GO:0046872(InterPro)
Hepe07g0289 217 ProSiteProfiles Zinc finger C3H1-type profile. 84 111 IPR000571 GO:0046872(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe07g0289 Hepe-Chr7:2924467 Hepe08g2641 Hepe-Chr8:68409621 1.16e-54 dispersed
Hepe07g0289 Hepe-Chr7:2924467 Hepe09g0842 Hepe-Chr9:8293413 4.47e-56 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55890 PF00642 zf-CCCH 1.10E-05 CL0537 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe07g0289 - - - 0.0