Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe07g0362 ATGACGAGACAAAAAATAGAGATAAAGAAAATAGACAATATAGCAGCAAGGCAAGTGACATTTTCGAAGAGAAGAAGAGGGCTATTCAAAAAAGCTCATGAACTCGCAACTCTTTGTGATGCTGATATTGCTCTCATTGTTTTTTCTGCTTCTGGAAAGCTATTTGACTATTCTAGCTCAAGCATGCAGGAGTTACTGAGAAGACATAACATGCTACCAGAGGTGAATAACTTTAGCCAACCTCCATCTCAGCTTGAAAAGAGTGCCTATTCTAAATTGACTGAGGAATTTGCAACCAAGACTAAAGAACTTAGGCATATGAGGGGAGAGGAGCTACAAGGAATGGGAATAGAAGAATTAAAGCAGCTGGAGAAACTGCTTGAGATTGGTTTGAGTCGTGTAATAGAGACCAAGGATGAGAAGTTTCTAAAAGAGATTGGTGCTGTAAAGGAGAAGGAAGCTTTGTTGATGAAAGAGAATCAGCGACTAAGGAATCAAATGGCAACTTTGAATAGAGAGCAAGAACAACAAGCAGTGATTGGTGGGAATAATTCCTTGTGGTCAAAGTCAAACACCAGCAACAGCAGCTCCTCAACAAACCCTAATTCTCAAGATTATGATGACATCTCTCTTAAATTGGGTCTTTGA 648 39.35 MTRQKIEIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSSSMQELLRRHNMLPEVNNFSQPPSQLEKSAYSKLTEEFATKTKELRHMRGEELQGMGIEELKQLEKLLEIGLSRVIETKDEKFLKEIGAVKEKEALLMKENQRLRNQMATLNREQEQQAVIGGNNSLWSKSNTSNSSSSTNPNSQDYDDISLKLGL 215
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
7 3674099 3681735 + Hsped.07g03620.1 Hepe07g0362 573757
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Hepe07g0362 215 MobiDBLite consensus disorder prediction 179 207 - -
Hepe07g0362 215 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe07g0362 215 Pfam K-box region 86 167 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Hepe07g0362 215 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 197 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Hepe07g0362 215 ProSiteProfiles K-box domain profile. 83 173 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Hepe07g0362 215 Gene3D - 15 96 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe07g0362 215 FunFam Transcription factor, MADS-box 13 83 - -
Hepe07g0362 215 CDD MADS_MEF2_like 3 69 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Hepe07g0362 215 SUPERFAMILY SRF-like 2 83 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe07g0362 215 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe07g0362 215 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe07g0362 215 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe07g0362 215 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe07g0362 215 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe07g0362 215 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe07g0362 215 MobiDBLite consensus disorder prediction 179 215 - -
Hepe07g0362 215 Coils Coil 153 176 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g1400 Hepe-Chr4:69624078 Hepe07g0362 Hepe-Chr7:3674099 1.07e-56 dispersed
Hepe07g0362 Hepe-Chr7:3674099 Hepe10g0423 Hepe-Chr10:4743159 4.10e-53 dispersed
Hepe07g0362 Hepe-Chr7:3674099 Hepe07g0369 Hepe-Chr7:3752332 5.94e-27 proximal
Hepe02g0720 Hepe-Chr2:7912234 Hepe07g0362 Hepe-Chr7:3674099 8.73e-58 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55895 PF01486 K-box 8.40E-16 No_clan Hepe TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe07g0362 - - - 0.0