Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe07g0369 ATGGGAAGAGGGAAGATAGTGATTAGAAGGATAGACAATTCAACAAGCAGACAAGTAACTTTTTCAAAGAGAAGAAGTGGATTATTGAAGAAGGCAAGAGAGCTTTCAATTCTTTGTGATGCAGAAGTTGGATTGATCATTTTTTCAAGTACTGGCAAACTCTATGATTATTCCAACACCAGCATAAGGTCGATTACTGATCGCTACAGCAAAATGAAAGAAGAGCAAAATCAGTTAATGAACTCTGTTTCAGAACTCCAGTTTTGGCAAAGAGAGGCAGCTGCTTTGAAGCAACAACTGCATTACTTGCAAGAATGTCACAGACAAATGATGGGTGAAGAACTATCTGGCCTGAGTGTCAAAGATCTACAAAATCTGGAAAGCCAGTTGGAAATGAGTTTGAAAGGTGTCCGTGTGAAAAAGGAAAAGATTTTAAGTGATGAAATTACTGAACTAAGACAGAAGGGGAATCATATGCATCAAGAAAATGTAGAACTCTACAACAAATTAGATATGATTCGCAAGGAAAATGCAGAACTGCAAATGAAGGCTTGTGGACAAATGGAAGGGGACAAAACGAGCAGTAGCTCAGTTCATCAATTCACTATCACCAATAGATACAGTATGCCTGCTCCTGTCCATCTACAGCTAAGACAGCCACAAAACAACGAAACACCAGTACCAGGGATAAAGCTGGGGTATGTTCTAGCAATCTGTGTTCATCACGTGTGA 732 39.34 MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKARELSILCDAEVGLIIFSSTGKLYDYSNTSIRSITDRYSKMKEEQNQLMNSVSELQFWQREAAALKQQLHYLQECHRQMMGEELSGLSVKDLQNLESQLEMSLKGVRVKKEKILSDEITELRQKGNHMHQENVELYNKLDMIRKENAELQMKACGQMEGDKTSSSSVHQFTITNRYSMPAPVHLQLRQPQNNETPVPGIKLGYVLAICVHHV 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3752332 3762431 + Hsped.07g03690.1 Hepe07g0369 573764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe07g0369 243 SUPERFAMILY SRF-like 2 90 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe07g0369 243 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe07g0369 243 Coils Coil 163 183 - -
Hepe07g0369 243 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Hepe07g0369 243 Pfam K-box region 83 170 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Hepe07g0369 243 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe07g0369 243 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Hepe07g0369 243 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe07g0369 243 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe07g0369 243 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe07g0369 243 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe07g0369 243 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 196 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Hepe07g0369 243 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Hepe07g0369 243 Coils Coil 72 99 - -
Hepe07g0369 243 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe07g0369 243 Gene3D - 13 92 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g2184 Hepe-Chr1:86516586 Hepe07g0369 Hepe-Chr7:3752332 1.36e-79 dispersed
Hepe04g0412 Hepe-Chr4:53459249 Hepe07g0369 Hepe-Chr7:3752332 1.81e-37 dispersed
Hepe04g1384 Hepe-Chr4:69499031 Hepe07g0369 Hepe-Chr7:3752332 3.46e-66 dispersed
Hepe04g1949 Hepe-Chr4:74374283 Hepe07g0369 Hepe-Chr7:3752332 1.94e-43 dispersed
Hepe07g0369 Hepe-Chr7:3752332 Hepe08g0613 Hepe-Chr8:5370745 4.00e-43 dispersed
Hepe07g0362 Hepe-Chr7:3674099 Hepe07g0369 Hepe-Chr7:3752332 5.94e-27 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55896 PF01486 K-box 5.70E-26 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe07g0369 K09264 - csv:101203098 392.504