Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe07g0389 ATGAGGAAGAGCAGAGGTAGGCAAAAGGTGGAGATGGTGAAGATGCCAAATGAGAGCAACCTTCAAGTCACCTTCTCGAAGCGTCGGTCCGGCCTCTTCAAGAAAGCTAGCGAGCTCTGCACGCTTTGCGGCGCCGAGATCGCGATCATCGTCTTCTCACCTGGGAAGAAGGTTTTCTCCTTTGGCCATCCTTGTGTCGAGGCTCTCATCGAGCGCTTTGTGACTCGGAACCCCCCGCCGAGCTCCGGAACGCTCCAACTGATCGAAGCTCATCGAAATGCTAATGTTCGAGAACTGAATGTGCAACTGACTCAAGTGTTGAATCAACTGGAGATGGAGCGAAAACGCAGTGAAGAGTTGAACAAATTGCGAAAAGCAAGTCAGGCACAATGCTGGTGGGAGCTTCCCATTGAAGAAATGGAAATGCATCAACTCGAGCAACTTAAAGCATCAATGGATGAACTAAAGAAGAATGTCACACAACAAGCTGATCGGATTTTGATTCAGACCTCCAATGCCAATATTCCGCCGCCGCAATTCTTCCCGACTCCGACGCCTACAAACCCGAACCAGCAAGGTGGCGTTTTCGTCGTCGATCCAAAGAATATGATCTCTCATCTTCCCTACAACTATGGCTCCTATGGATCAAGAGGCTTCTTTTGA 663 49.47 MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFSFGHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNVQLTQVLNQLEMERKRSEELNKLRKASQAQCWWELPIEEMEMHQLEQLKASMDELKKNVTQQADRILIQTSNANIPPPQFFPTPTPTNPNQQGGVFVVDPKNMISHLPYNYGSYGSRGFF 220
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3973210 3974186 - Hsped.07g03890.1 Hepe07g0389 573784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe07g0389 220 ProSiteProfiles MADS-box domain profile. 5 65 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe07g0389 220 Coils Coil 138 165 - -
Hepe07g0389 220 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 15 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe07g0389 220 PRINTS MADS domain signature 27 42 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe07g0389 220 PRINTS MADS domain signature 7 27 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe07g0389 220 PRINTS MADS domain signature 42 63 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe07g0389 220 SUPERFAMILY SRF-like 6 78 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe07g0389 220 Coils Coil 93 130 - -
Hepe07g0389 220 Gene3D - 83 175 - -
Hepe07g0389 220 Gene3D - 17 81 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe07g0389 220 SMART madsneu2 5 64 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe07g0389 220 PANTHER MADS BOX PROTEIN 6 156 - GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Hepe07g0389 220 FunFam Agamous-like MADS-box protein AGL62 17 83 - -
Hepe07g0389 220 CDD MADS_MEF2_like 6 73 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe05g0663 Hepe-Chr5:10948473 Hepe07g0389 Hepe-Chr7:3973210 6.79e-49 dispersed
Hepe07g0389 Hepe-Chr7:3973210 Hepe08g1198 Hepe-Chr8:12349933 6.04e-32 dispersed
Hepe07g0389 Hepe-Chr7:3973210 Hepe04g1979 Hepe-Chr4:74621892 1.50e-45 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55897 PF00319 SRF-TF 3.50E-24 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe07g0389 - - - 0.0