Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Hepe07g0389 | ATGAGGAAGAGCAGAGGTAGGCAAAAGGTGGAGATGGTGAAGATGCCAAATGAGAGCAACCTTCAAGTCACCTTCTCGAAGCGTCGGTCCGGCCTCTTCAAGAAAGCTAGCGAGCTCTGCACGCTTTGCGGCGCCGAGATCGCGATCATCGTCTTCTCACCTGGGAAGAAGGTTTTCTCCTTTGGCCATCCTTGTGTCGAGGCTCTCATCGAGCGCTTTGTGACTCGGAACCCCCCGCCGAGCTCCGGAACGCTCCAACTGATCGAAGCTCATCGAAATGCTAATGTTCGAGAACTGAATGTGCAACTGACTCAAGTGTTGAATCAACTGGAGATGGAGCGAAAACGCAGTGAAGAGTTGAACAAATTGCGAAAAGCAAGTCAGGCACAATGCTGGTGGGAGCTTCCCATTGAAGAAATGGAAATGCATCAACTCGAGCAACTTAAAGCATCAATGGATGAACTAAAGAAGAATGTCACACAACAAGCTGATCGGATTTTGATTCAGACCTCCAATGCCAATATTCCGCCGCCGCAATTCTTCCCGACTCCGACGCCTACAAACCCGAACCAGCAAGGTGGCGTTTTCGTCGTCGATCCAAAGAATATGATCTCTCATCTTCCCTACAACTATGGCTCCTATGGATCAAGAGGCTTCTTTTGA | 663 | 49.47 | MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFSFGHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNVQLTQVLNQLEMERKRSEELNKLRKASQAQCWWELPIEEMEMHQLEQLKASMDELKKNVTQQADRILIQTSNANIPPPQFFPTPTPTNPNQQGGVFVVDPKNMISHLPYNYGSYGSRGFF | 220 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 3973210 | 3974186 | - | Hsped.07g03890.1 | Hepe07g0389 | 573784 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Hepe07g0389 | 220 | ProSiteProfiles | MADS-box domain profile. | 5 | 65 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Hepe07g0389 | 220 | Coils | Coil | 138 | 165 | - | - | |
Hepe07g0389 | 220 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 15 | 61 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Hepe07g0389 | 220 | PRINTS | MADS domain signature | 27 | 42 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Hepe07g0389 | 220 | PRINTS | MADS domain signature | 7 | 27 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Hepe07g0389 | 220 | PRINTS | MADS domain signature | 42 | 63 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Hepe07g0389 | 220 | SUPERFAMILY | SRF-like | 6 | 78 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Hepe07g0389 | 220 | Coils | Coil | 93 | 130 | - | - | |
Hepe07g0389 | 220 | Gene3D | - | 83 | 175 | - | - | |
Hepe07g0389 | 220 | Gene3D | - | 17 | 81 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Hepe07g0389 | 220 | SMART | madsneu2 | 5 | 64 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Hepe07g0389 | 220 | PANTHER | MADS BOX PROTEIN | 6 | 156 | - | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Hepe07g0389 | 220 | FunFam | Agamous-like MADS-box protein AGL62 | 17 | 83 | - | - | |
Hepe07g0389 | 220 | CDD | MADS_MEF2_like | 6 | 73 | IPR033896 | GO:0000977(InterPro)|GO:0045944(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Hepe05g0663 | Hepe-Chr5:10948473 | Hepe07g0389 | Hepe-Chr7:3973210 | 6.79e-49 | dispersed | |
Hepe07g0389 | Hepe-Chr7:3973210 | Hepe08g1198 | Hepe-Chr8:12349933 | 6.04e-32 | dispersed | |
Hepe07g0389 | Hepe-Chr7:3973210 | Hepe04g1979 | Hepe-Chr4:74621892 | 1.50e-45 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
55897 | PF00319 | SRF-TF | 3.50E-24 | No_clan | Hepe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Hepe07g0389 | - | - | - | 0.0 |