Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe07g0403 ATGTCTCTCTCTCGCTCTCCTGACCACGCCGGACGCTACCACATCGCCGCCGCCGACTTCCTCACTTCCACCACGGCGACCTCTCCGATCTCCGATGACTCCTCCATTTTCACACTTCTTCAATCGGAACTCGACCACATGCCTCGCCGCGACTACGTTCGCCGCTGCCGCGACCGCTCGATCGACGTCACCACCCGCCAAGACTCCATTAACTGGATCTTGAAGGTGCACGCTCACTACAATTTCAAACCAGTCACTGCGATTCTCTCCGTTAATTACTTCGATCGCTTCCTCTCCTCCAATTTCCTTCCGCGGCGGAATGGATGGCCGTTTCAGCTTCTATCGGTGGCGTGTTTATCTTTAGCGGCGAAAATGGAGGAGCCGCTGGTTCCACTGCTTATAGACCTCCAAATCTTCGATCCTAAATACGTCTTCGAGCCCAAAACCGTTCAGAGAATGGAGCTTTTCGTCATGTCGATTCTCAATTGGAGATTACGCGCCGTTACGCCTTTCGATTTCCTCCACCACTTCATCTCCGATCTTCCGTCTTCTTCCGCCGCAGACGGCGACGGCGACGATCCCCATTGCCTCTTCTTAACTTCTTCCGATCTCATTCTCAGCACCACACGCGTGATCGATTTCTTGGGGTTTCCGCCGTCCGCCATTGCTGCCGCCGCCGTTCTCTGCGCCGCCGGTGAACGGTTCGATTCTCCGGCTGTTTGTAGCCATTTCCTTTTGGCGAACAGAGTCGAAATGGTAAGAAGCTGTCAACAACTAATGGAGGAGTACGTGATTGACACGTGTCCAGCAGAGCTCCTAAAACAGCGGAGCGGAAGAGGCGAGCAGGCGGCGCCGCCGAGTCCAGTCGGTGTGCTCGACGCGGCTGCATGTGGTAGCTGTGACACGCACTTGGACAATCCCGGCTCTACCAGCCACGAAGCCGAGCCGCCGATAAAGAGGCTTCGATCCTCTGCGCCGGATGTACAGGAGCAGTAG 996 55.92 MSLSRSPDHAGRYHIAAADFLTSTTATSPISDDSSIFTLLQSELDHMPRRDYVRRCRDRSIDVTTRQDSINWILKVHAHYNFKPVTAILSVNYFDRFLSSNFLPRRNGWPFQLLSVACLSLAAKMEEPLVPLLIDLQIFDPKYVFEPKTVQRMELFVMSILNWRLRAVTPFDFLHHFISDLPSSSAADGDGDDPHCLFLTSSDLILSTTRVIDFLGFPPSAIAAAAVLCAAGERFDSPAVCSHFLLANRVEMVRSCQQLMEEYVIDTCPAELLKQRSGRGEQAAPPSPVGVLDAAACGSCDTHLDNPGSTSHEAEPPIKRLRSSAPDVQEQ 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4097261 4099659 - Hsped.07g04030.1 Hepe07g0403 573798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe07g0403 331 SMART Cyclin_C_2 168 288 IPR004367 -
Hepe07g0403 331 CDD CYCLIN_AtCycD-like_rpt1 66 163 - -
Hepe07g0403 331 SUPERFAMILY Cyclin-like 150 261 IPR036915 -
Hepe07g0403 331 PANTHER CYCLINS 33 243 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Hepe07g0403 331 MobiDBLite consensus disorder prediction 302 331 - -
Hepe07g0403 331 Gene3D - 38 258 - -
Hepe07g0403 331 SUPERFAMILY Cyclin-like 31 165 IPR036915 -
Hepe07g0403 331 ProSitePatterns Cyclins signature. 66 97 IPR048258 -
Hepe07g0403 331 SMART cyclin_7 71 159 IPR013763 -
Hepe07g0403 331 FunFam D2/4-type cyclin 49 166 - -
Hepe07g0403 331 Pfam Cyclin, N-terminal domain 38 166 IPR006671 -
Hepe07g0403 331 Gene3D - 49 166 - -
Hepe07g0403 331 Pfam Cyclin, C-terminal domain 168 265 IPR004367 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g1313 Hepe-Chr4:68756021 Hepe07g0403 Hepe-Chr7:4097261 2.15e-31 dispersed
Hepe07g0403 Hepe-Chr7:4097261 Hepe10g1669 Hepe-Chr10:53378694 6.49e-64 dispersed
Hepe07g0403 Hepe-Chr7:4097261 Hepe04g1407 Hepe-Chr4:69713449 8.80e-60 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe07g0403 K18810 - csv:101219121 471.855