Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe07g0407 ATGGGTGCTCCAAAGCAGAAATGGACTAACCAAGAAGAATCAGCCCTGAAGGCCGGAGTTGTTAAGCACGGAGCAGGAAAGTGGCGAACGATTCTTAAGGATCCTGAATTCAGCAATGTACTGTATCTTCGTTCAAATGTTGATCTCAAGGACAAGTGGAGAAATATGAGTGTCATGGCTAATGGCTGGGGGTCCCGAGAGAAGGCCAGGTTGGCAATTAAGAGATTGCAGGCTCCTAAAAAAGATGAGAACATTGCCACACAAATTGTTGCTGTCCAAAGTGAAGATGAATTGCCAGAAGCTAAGTCTATTTCTCTTTCCTCGGATATCAAGCAGATATCTGGTTCAAAGGGATCCAATGTAAGAAAAGAAGAAGAGGAGGAAGATGAAGAAGAAGAAGAAAAGGAAGTAGAAAGAATAGAAAGAGATGCAAGATATGATAGTCATAGGTTAGACAATCTTATAATTGAGGCAATTACTAGCTTGAGGGAACGTGGTGGCTCTAATAAGACAGACATTACCTCATATATAGAGGATCAATATTGGGCACCTCCAGACTTCAAGAGGTTGTTATCAACAAAATTGAAGTTCTTAACAGCTAGTGGTAAACTGGTCAAGGCCAAACGGAAATATAGGCTTCCTCCAGGGGTGCCTTCGTCAGAGAGGAGCTCTATGTTGTTGTTGGATGACCAGCAAAGAGCTTCTATAAGAGACAAGGAGGAAATGTGTATTCTTGCGAAAGCTCAAATTGATCTCGAATTAGCCAAGATGAGGACCATGACTTCCCAAGAGGCAGCGGCAGCTGCTGCTCGAGCAGTTGCAGAAGCAGAAGCAGCAATAGCAGAAGCTGAAGAGGCGGCAAGGGAAGCCGAGGCAGCTGAAGCTGATGCAGAAGCAGCACAGTCATTTGCAGAAGCCGCAATGAAGACACTGAAAGGAAGAAATCTCCCGAAGATGATGATCCGGGTTTGA 972 44.44 MGAPKQKWTNQEESALKAGVVKHGAGKWRTILKDPEFSNVLYLRSNVDLKDKWRNMSVMANGWGSREKARLAIKRLQAPKKDENIATQIVAVQSEDELPEAKSISLSSDIKQISGSKGSNVRKEEEEEDEEEEEKEVERIERDARYDSHRLDNLIIEAITSLRERGGSNKTDITSYIEDQYWAPPDFKRLLSTKLKFLTASGKLVKAKRKYRLPPGVPSSERSSMLLLDDQQRASIRDKEEMCILAKAQIDLELAKMRTMTSQEAAAAAARAVAEAEAAIAEAEEAAREAEAAEADAEAAQSFAEAAMKTLKGRNLPKMMIRV 323
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
7 4143117 4148018 + Hsped.07g04070.1 Hepe07g0407 573802
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Hepe07g0407 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 33 IPR017930 -
Hepe07g0407 323 SMART sant 4 59 IPR001005 -
Hepe07g0407 323 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 147 215 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Hepe07g0407 323 Coils Coil 120 143 - -
Hepe07g0407 323 Coils Coil 266 303 - -
Hepe07g0407 323 SMART h15plus2 146 210 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Hepe07g0407 323 SUPERFAMILY Homeodomain-like 2 73 IPR009057 -
Hepe07g0407 323 CDD SANT_TRF 6 56 - -
Hepe07g0407 323 Gene3D - 146 222 IPR036388 -
Hepe07g0407 323 SUPERFAMILY Winged helix DNA-binding domain 148 221 IPR036390 -
Hepe07g0407 323 FunFam Telomere repeat-binding factor 1 8 86 - -
Hepe07g0407 323 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Hepe07g0407 323 Gene3D - 8 94 - -
Hepe07g0407 323 MobiDBLite consensus disorder prediction 109 139 - -
Hepe07g0407 323 PANTHER SINGLE MYB HISTONE 4 1 317 IPR044597 GO:0003691(InterPro)
Hepe07g0407 323 Pfam linker histone H1 and H5 family 151 208 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Hepe07g0407 323 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Hepe07g0407 323 FunFam Telomere repeat-binding factor 1 2 58 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g2350 Hepe-Chr1:88019712 Hepe07g0407 Hepe-Chr7:4143117 2.51e-07 dispersed
Hepe02g1515 Hepe-Chr2:19792414 Hepe07g0407 Hepe-Chr7:4143117 2.66e-28 dispersed
Hepe06g1959 Hepe-Chr6:70831045 Hepe07g0407 Hepe-Chr7:4143117 5.82e-08 dispersed
Hepe07g0407 Hepe-Chr7:4143117 Hepe08g0681 Hepe-Chr8:6116629 1.83e-06 dispersed
Hepe04g1324 Hepe-Chr4:68823358 Hepe07g0407 Hepe-Chr7:4143117 7.35e-77 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55898 PF00538 Linker_histone 2.30E-08 CL0123 Hepe TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe07g0407 K09422 - csv:101218411 451.44