Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe07g0407 ATGGGTGCTCCAAAGCAGAAATGGACTAACCAAGAAGAATCAGCCCTGAAGGCCGGAGTTGTTAAGCACGGAGCAGGAAAGTGGCGAACGATTCTTAAGGATCCTGAATTCAGCAATGTACTGTATCTTCGTTCAAATGTTGATCTCAAGGACAAGTGGAGAAATATGAGTGTCATGGCTAATGGCTGGGGGTCCCGAGAGAAGGCCAGGTTGGCAATTAAGAGATTGCAGGCTCCTAAAAAAGATGAGAACATTGCCACACAAATTGTTGCTGTCCAAAGTGAAGATGAATTGCCAGAAGCTAAGTCTATTTCTCTTTCCTCGGATATCAAGCAGATATCTGGTTCAAAGGGATCCAATGTAAGAAAAGAAGAAGAGGAGGAAGATGAAGAAGAAGAAGAAAAGGAAGTAGAAAGAATAGAAAGAGATGCAAGATATGATAGTCATAGGTTAGACAATCTTATAATTGAGGCAATTACTAGCTTGAGGGAACGTGGTGGCTCTAATAAGACAGACATTACCTCATATATAGAGGATCAATATTGGGCACCTCCAGACTTCAAGAGGTTGTTATCAACAAAATTGAAGTTCTTAACAGCTAGTGGTAAACTGGTCAAGGCCAAACGGAAATATAGGCTTCCTCCAGGGGTGCCTTCGTCAGAGAGGAGCTCTATGTTGTTGTTGGATGACCAGCAAAGAGCTTCTATAAGAGACAAGGAGGAAATGTGTATTCTTGCGAAAGCTCAAATTGATCTCGAATTAGCCAAGATGAGGACCATGACTTCCCAAGAGGCAGCGGCAGCTGCTGCTCGAGCAGTTGCAGAAGCAGAAGCAGCAATAGCAGAAGCTGAAGAGGCGGCAAGGGAAGCCGAGGCAGCTGAAGCTGATGCAGAAGCAGCACAGTCATTTGCAGAAGCCGCAATGAAGACACTGAAAGGAAGAAATCTCCCGAAGATGATGATCCGGGTTTGA 972 44.44 MGAPKQKWTNQEESALKAGVVKHGAGKWRTILKDPEFSNVLYLRSNVDLKDKWRNMSVMANGWGSREKARLAIKRLQAPKKDENIATQIVAVQSEDELPEAKSISLSSDIKQISGSKGSNVRKEEEEEDEEEEEKEVERIERDARYDSHRLDNLIIEAITSLRERGGSNKTDITSYIEDQYWAPPDFKRLLSTKLKFLTASGKLVKAKRKYRLPPGVPSSERSSMLLLDDQQRASIRDKEEMCILAKAQIDLELAKMRTMTSQEAAAAAARAVAEAEAAIAEAEEAAREAEAAEADAEAAQSFAEAAMKTLKGRNLPKMMIRV 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4143117 4148018 + Hsped.07g04070.1 Hepe07g0407 573802

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe07g0407 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 33 IPR017930 -
Hepe07g0407 323 SMART sant 4 59 IPR001005 -
Hepe07g0407 323 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 147 215 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Hepe07g0407 323 Coils Coil 120 143 - -
Hepe07g0407 323 Coils Coil 266 303 - -
Hepe07g0407 323 SMART h15plus2 146 210 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Hepe07g0407 323 SUPERFAMILY Homeodomain-like 2 73 IPR009057 -
Hepe07g0407 323 CDD SANT_TRF 6 56 - -
Hepe07g0407 323 Gene3D - 146 222 IPR036388 -
Hepe07g0407 323 SUPERFAMILY Winged helix DNA-binding domain 148 221 IPR036390 -
Hepe07g0407 323 FunFam Telomere repeat-binding factor 1 8 86 - -
Hepe07g0407 323 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Hepe07g0407 323 Gene3D - 8 94 - -
Hepe07g0407 323 MobiDBLite consensus disorder prediction 109 139 - -
Hepe07g0407 323 PANTHER SINGLE MYB HISTONE 4 1 317 IPR044597 GO:0003691(InterPro)
Hepe07g0407 323 Pfam linker histone H1 and H5 family 151 208 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Hepe07g0407 323 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Hepe07g0407 323 FunFam Telomere repeat-binding factor 1 2 58 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe07g0407 K09422 - - csv:101218411 451.44
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g2350 Hepe-Chr1:88019712 Hepe07g0407 Hepe-Chr7:4143117 2.51e-07 dispersed
Hepe02g1515 Hepe-Chr2:19792414 Hepe07g0407 Hepe-Chr7:4143117 2.66e-28 dispersed
Hepe06g1959 Hepe-Chr6:70831045 Hepe07g0407 Hepe-Chr7:4143117 5.82e-08 dispersed
Hepe07g0407 Hepe-Chr7:4143117 Hepe08g0681 Hepe-Chr8:6116629 1.83e-06 dispersed
Hepe04g1324 Hepe-Chr4:68823358 Hepe07g0407 Hepe-Chr7:4143117 7.35e-77 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe07g0407 . 1 322 Single Myb Histone (SMH) Gene Family AT1G49950 58.9 1.5e-72 270.0
Hepe04g1324 . 1 246 Single Myb Histone (SMH) Gene Family AT1G49950 53.9 5.0e-63 238.4
Hepe04g1324 . 1 246 Single Myb Histone (SMH) Gene Family AT5G67580 53.2 2.4e-65 246.1
Hepe04g1324 . 1 246 Single Myb Histone (SMH) Gene Family AT3G49850 51.8 5.6e-59 224.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005794 2 4 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 2 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55898 PF00538 Linker_histone 2.30E-08 CL0123 Hepe TF