Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe07g0453 ATGGCGACTCAGGTGCAAGTGCAGCAAGCTCAGCCTCCGAATGCTATTTCCGGCATCAATGCGGCTGCGAATGGTGGTGCCAATTTTGTCACTACTTCTTTGTATGTCGGAGATCTGGACCTGAATGTCACCGATTCGCAGCTTTATGATATATTTAATCAGGTGGGTCAGGTTGTTTCAGTTCGGGTTTGCCGCGACTTGACCACCCGGCGATCTCTCGGTTATGGTTATGTCAACTACAGCAACCCACAAGATGCTGCAAGAGCATTGGATGTGCTGAACTTTACCCCTCTGAATGGAAAGCCTATTAGAGTCATGTATTCTCACCGTGACCCAAGCATTCGCAAAAGTGGTGCTGGAAATATATTTATCAAGAATTTAGACAGAGCAATTGACCACAAAGCTCTACACGATACATTTTCTGCATTTGGTAGTATTCTGTCTTGCAAAGTGGCTTTAGATTCCTCTGGCCAGTCAAAGGGCTATGGTTTTGTGCAATTTGAAACTGAGGAGTCTGCTCTTAAAGCAATTGATAAGTTGAACGGTATGCTGTTGAATGATAAGCAAGTTTATGTAGGACCCTTTCTTCGTAAACAAGAAAGAGATAGTTCTGTTGACAAATCCAGATTTAACAATGTATTTGTCAAAAATATTGGTGAGACAACTACTGAAGAAGATTTGAACAAGGCTTTTTCTGAATTTGGGACAATCACCAGTATTGTTGTGATGAGGGATGCTGATGGAAAATCAAGATGCTTTGGATTTGTGAATTTTGAGAGTGCTGATGATGCTGCTAGGGCAGTTGATGCCCTTAATGGAAAGGTATTTGAAGATAAGGAGTGGTATGTAGGGAAAGCACAGAAAAAATCTGAAAGAGAAGTTGAATTGAAGCACCGGTTTGAACAAACTATGAAAGAGGCAGCTGACAAGTACCAGGGGGCGAACTTGTACATTAAAAATTTAGATGATAGCATTAGTGATGATAAGCTTAAGGAGCTGTTTGCTCCATTTGGCACGATCACCTCGTGCAAGGTCATGCGCGACCCCAATGGTATAAGCAGAGGATCTGGATTTGTTGCATTCTCAACCCCTGAAGAGGCATCTAGAGCTCTTATGGAGATGAATGGCAAAATGGTTGCTAGCAAACCATTGTATGTAGCACTTGCACAGCGAAAGGAGGATAGAAGAGCCAGATTACAGGCTCAGTTTTCTCAAGTACGGCCAGTTTCCATGGCTTCTTCAGTTCCCCCTCGAATGCCAATGTATCCCCCTGGTGGTCCAGGTATCGGACAGCAATTGTTTTATGGTCAAGCTCCTCCTACAATGATTCCTTCCCAAGGTGGCTTTGGTTATCAGCAGCAGCTTGTTCCTGGTATAAGGCCTGGCGGAGGTCCAATGCCAAATTTCTTTGTCCCAATGGTTCAGCAGGGTCAGCAAGGCCCGCGCCCTGGTGGCAGACGTGCAGGAGCTGTCCAGCAAACTCAGCAGCCTGTTCCAATGATGCAACAACAGATGTTGCCTAGAGGAGGACGTGTCTATCGCTATCCCCCAGGAAGAGGTTTGCCTGATGTTCCTATGCCTGGTGTTGCTGGAGGCATGTTTTCTGTTCCATATGACATGGGAGGTATGCCAATGCGTGATGCGTCACTCTCTCAACCTATCCCTATAGGTGCTCTTGCATCTGCTCTGGCAAATTCTACTCCTGACCAACAGAGAACGATGCTGGGAGAGAATCTTTACCCGCTCGTGGAACAGTGTGAGCCTGACAACGCAGCTAAGGTAACTGGAATGCTTCTGGAGATGGACCAGACTGAGGTTTTGCATTTACTAGAGTCCCCGGAGGCTTTGAAGGCCAAAGTAGCTGAGGCTATGGATGTTCTGAGGAATGTAGCCGCAGCTCAGCAGGCTGGCAATGCAGCTGATCAGCTAGCCTCTCTGTCGCTGACCGAGAACCTCGTGTCGTGA 1965 46.36 MATQVQVQQAQPPNAISGINAAANGGANFVTTSLYVGDLDLNVTDSQLYDIFNQVGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNGKPIRVMYSHRDPSIRKSGAGNIFIKNLDRAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFETEESALKAIDKLNGMLLNDKQVYVGPFLRKQERDSSVDKSRFNNVFVKNIGETTTEEDLNKAFSEFGTITSIVVMRDADGKSRCFGFVNFESADDAARAVDALNGKVFEDKEWYVGKAQKKSEREVELKHRFEQTMKEAADKYQGANLYIKNLDDSISDDKLKELFAPFGTITSCKVMRDPNGISRGSGFVAFSTPEEASRALMEMNGKMVASKPLYVALAQRKEDRRARLQAQFSQVRPVSMASSVPPRMPMYPPGGPGIGQQLFYGQAPPTMIPSQGGFGYQQQLVPGIRPGGGPMPNFFVPMVQQGQQGPRPGGRRAGAVQQTQQPVPMMQQQMLPRGGRVYRYPPGRGLPDVPMPGVAGGMFSVPYDMGGMPMRDASLSQPIPIGALASALANSTPDQQRTMLGENLYPLVEQCEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRNVAAAQQAGNAADQLASLSLTENLVS 654
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4693582 4698513 + Hsped.07g04530.1 Hepe07g0453 573848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe07g0453 654 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 211 288 IPR000504 GO:0003723(InterPro)
Hepe07g0453 654 FunFam Polyadenylate-binding protein 297 402 - -
Hepe07g0453 654 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 32 110 IPR000504 GO:0003723(InterPro)
Hepe07g0453 654 CDD RRM1_I_PABPs 33 112 IPR034364 -
Hepe07g0453 654 SMART rrm1_1 315 387 IPR000504 GO:0003723(InterPro)
Hepe07g0453 654 SMART rrm1_1 121 193 IPR000504 GO:0003723(InterPro)
Hepe07g0453 654 SMART rrm1_1 212 284 IPR000504 GO:0003723(InterPro)
Hepe07g0453 654 SMART rrm1_1 33 106 IPR000504 GO:0003723(InterPro)
Hepe07g0453 654 FunFam Polyadenylate-binding protein 551 633 - -
Hepe07g0453 654 FunFam Polyadenylate-binding protein 202 296 - -
Hepe07g0453 654 SUPERFAMILY RNA-binding domain, RBD 32 201 IPR035979 GO:0003676(InterPro)
Hepe07g0453 654 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 120 192 IPR000504 GO:0003723(InterPro)
Hepe07g0453 654 FunFam Polyadenylate-binding protein 18 117 - -
Hepe07g0453 654 MobiDBLite consensus disorder prediction 477 496 - -
Hepe07g0453 654 Pfam RNA recognition motif 34 104 IPR000504 GO:0003723(InterPro)
Hepe07g0453 654 Pfam RNA recognition motif 316 384 IPR000504 GO:0003723(InterPro)
Hepe07g0453 654 Pfam RNA recognition motif 213 281 IPR000504 GO:0003723(InterPro)
Hepe07g0453 654 Pfam RNA recognition motif 122 190 IPR000504 GO:0003723(InterPro)
Hepe07g0453 654 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 33 628 IPR006515 GO:0003723(InterPro)
Hepe07g0453 654 FunFam Polyadenylate-binding protein 118 201 - -
Hepe07g0453 654 PANTHER RNA BINDING PROTEIN 22 213 - GO:0003723(PANTHER)|GO:0003730(PANTHER)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0008143(PANTHER)|GO:0008266(PANTHER)|GO:1990904(PANTHER)
Hepe07g0453 654 SMART poly_2 567 630 IPR002004 GO:0003723(InterPro)
Hepe07g0453 654 SMART rrm2_1 212 284 IPR003954 GO:0003676(InterPro)
Hepe07g0453 654 SMART rrm2_1 315 387 IPR003954 GO:0003676(InterPro)
Hepe07g0453 654 SMART rrm2_1 121 193 IPR003954 GO:0003676(InterPro)
Hepe07g0453 654 SMART rrm2_1 33 106 IPR003954 GO:0003676(InterPro)
Hepe07g0453 654 Gene3D - 297 400 IPR012677 -
Hepe07g0453 654 CDD RRM2_I_PABPs 118 194 IPR045305 -
Hepe07g0453 654 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 314 391 IPR000504 GO:0003723(InterPro)
Hepe07g0453 654 Gene3D - 551 632 - -
Hepe07g0453 654 Pfam Poly-adenylate binding protein, unique domain 562 627 IPR002004 GO:0003723(InterPro)
Hepe07g0453 654 SUPERFAMILY PABC (PABP) domain 498 647 IPR036053 GO:0003723(InterPro)
Hepe07g0453 654 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 555 632 IPR002004 GO:0003723(InterPro)
Hepe07g0453 654 SUPERFAMILY RNA-binding domain, RBD 211 395 IPR035979 GO:0003676(InterPro)
Hepe07g0453 654 CDD RRM4_I_PABPs 313 391 - -
Hepe07g0453 654 Gene3D - 122 193 IPR012677 -
Hepe07g0453 654 Gene3D - 197 296 IPR012677 -
Hepe07g0453 654 Gene3D - 1 121 IPR012677 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g2823 Hepe-Chr2:77316626 Hepe07g0453 Hepe-Chr7:4693582 3.87e-232 dispersed
Hepe05g1305 Hepe-Chr5:61158519 Hepe07g0453 Hepe-Chr7:4693582 1.54e-29 dispersed
Hepe07g0453 Hepe-Chr7:4693582 Hepe08g1069 Hepe-Chr8:10395109 6.52e-19 dispersed
Hepe03g1070 Hepe-Chr3:60556255 Hepe07g0453 Hepe-Chr7:4693582 1.67e-14 transposed
Hepe05g0317 Hepe-Chr5:3919342 Hepe07g0453 Hepe-Chr7:4693582 1.57e-149 transposed
Hepe02g0597 Hepe-Chr2:6124328 Hepe07g0453 Hepe-Chr7:4693582 0.0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe07g0453 K13126 - csv:101219802 1137.09