Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Hepe07g0453 | ATGGCGACTCAGGTGCAAGTGCAGCAAGCTCAGCCTCCGAATGCTATTTCCGGCATCAATGCGGCTGCGAATGGTGGTGCCAATTTTGTCACTACTTCTTTGTATGTCGGAGATCTGGACCTGAATGTCACCGATTCGCAGCTTTATGATATATTTAATCAGGTGGGTCAGGTTGTTTCAGTTCGGGTTTGCCGCGACTTGACCACCCGGCGATCTCTCGGTTATGGTTATGTCAACTACAGCAACCCACAAGATGCTGCAAGAGCATTGGATGTGCTGAACTTTACCCCTCTGAATGGAAAGCCTATTAGAGTCATGTATTCTCACCGTGACCCAAGCATTCGCAAAAGTGGTGCTGGAAATATATTTATCAAGAATTTAGACAGAGCAATTGACCACAAAGCTCTACACGATACATTTTCTGCATTTGGTAGTATTCTGTCTTGCAAAGTGGCTTTAGATTCCTCTGGCCAGTCAAAGGGCTATGGTTTTGTGCAATTTGAAACTGAGGAGTCTGCTCTTAAAGCAATTGATAAGTTGAACGGTATGCTGTTGAATGATAAGCAAGTTTATGTAGGACCCTTTCTTCGTAAACAAGAAAGAGATAGTTCTGTTGACAAATCCAGATTTAACAATGTATTTGTCAAAAATATTGGTGAGACAACTACTGAAGAAGATTTGAACAAGGCTTTTTCTGAATTTGGGACAATCACCAGTATTGTTGTGATGAGGGATGCTGATGGAAAATCAAGATGCTTTGGATTTGTGAATTTTGAGAGTGCTGATGATGCTGCTAGGGCAGTTGATGCCCTTAATGGAAAGGTATTTGAAGATAAGGAGTGGTATGTAGGGAAAGCACAGAAAAAATCTGAAAGAGAAGTTGAATTGAAGCACCGGTTTGAACAAACTATGAAAGAGGCAGCTGACAAGTACCAGGGGGCGAACTTGTACATTAAAAATTTAGATGATAGCATTAGTGATGATAAGCTTAAGGAGCTGTTTGCTCCATTTGGCACGATCACCTCGTGCAAGGTCATGCGCGACCCCAATGGTATAAGCAGAGGATCTGGATTTGTTGCATTCTCAACCCCTGAAGAGGCATCTAGAGCTCTTATGGAGATGAATGGCAAAATGGTTGCTAGCAAACCATTGTATGTAGCACTTGCACAGCGAAAGGAGGATAGAAGAGCCAGATTACAGGCTCAGTTTTCTCAAGTACGGCCAGTTTCCATGGCTTCTTCAGTTCCCCCTCGAATGCCAATGTATCCCCCTGGTGGTCCAGGTATCGGACAGCAATTGTTTTATGGTCAAGCTCCTCCTACAATGATTCCTTCCCAAGGTGGCTTTGGTTATCAGCAGCAGCTTGTTCCTGGTATAAGGCCTGGCGGAGGTCCAATGCCAAATTTCTTTGTCCCAATGGTTCAGCAGGGTCAGCAAGGCCCGCGCCCTGGTGGCAGACGTGCAGGAGCTGTCCAGCAAACTCAGCAGCCTGTTCCAATGATGCAACAACAGATGTTGCCTAGAGGAGGACGTGTCTATCGCTATCCCCCAGGAAGAGGTTTGCCTGATGTTCCTATGCCTGGTGTTGCTGGAGGCATGTTTTCTGTTCCATATGACATGGGAGGTATGCCAATGCGTGATGCGTCACTCTCTCAACCTATCCCTATAGGTGCTCTTGCATCTGCTCTGGCAAATTCTACTCCTGACCAACAGAGAACGATGCTGGGAGAGAATCTTTACCCGCTCGTGGAACAGTGTGAGCCTGACAACGCAGCTAAGGTAACTGGAATGCTTCTGGAGATGGACCAGACTGAGGTTTTGCATTTACTAGAGTCCCCGGAGGCTTTGAAGGCCAAAGTAGCTGAGGCTATGGATGTTCTGAGGAATGTAGCCGCAGCTCAGCAGGCTGGCAATGCAGCTGATCAGCTAGCCTCTCTGTCGCTGACCGAGAACCTCGTGTCGTGA | 1965 | 46.36 | MATQVQVQQAQPPNAISGINAAANGGANFVTTSLYVGDLDLNVTDSQLYDIFNQVGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNGKPIRVMYSHRDPSIRKSGAGNIFIKNLDRAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFETEESALKAIDKLNGMLLNDKQVYVGPFLRKQERDSSVDKSRFNNVFVKNIGETTTEEDLNKAFSEFGTITSIVVMRDADGKSRCFGFVNFESADDAARAVDALNGKVFEDKEWYVGKAQKKSEREVELKHRFEQTMKEAADKYQGANLYIKNLDDSISDDKLKELFAPFGTITSCKVMRDPNGISRGSGFVAFSTPEEASRALMEMNGKMVASKPLYVALAQRKEDRRARLQAQFSQVRPVSMASSVPPRMPMYPPGGPGIGQQLFYGQAPPTMIPSQGGFGYQQQLVPGIRPGGGPMPNFFVPMVQQGQQGPRPGGRRAGAVQQTQQPVPMMQQQMLPRGGRVYRYPPGRGLPDVPMPGVAGGMFSVPYDMGGMPMRDASLSQPIPIGALASALANSTPDQQRTMLGENLYPLVEQCEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRNVAAAQQAGNAADQLASLSLTENLVS | 654 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 4693582 | 4698513 | + | Hsped.07g04530.1 | Hepe07g0453 | 573848 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Hepe07g0453 | 654 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 211 | 288 | IPR000504 | GO:0003723(InterPro) | |
Hepe07g0453 | 654 | FunFam | Polyadenylate-binding protein | 297 | 402 | - | - | |
Hepe07g0453 | 654 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 32 | 110 | IPR000504 | GO:0003723(InterPro) | |
Hepe07g0453 | 654 | CDD | RRM1_I_PABPs | 33 | 112 | IPR034364 | - | |
Hepe07g0453 | 654 | SMART | rrm1_1 | 315 | 387 | IPR000504 | GO:0003723(InterPro) | |
Hepe07g0453 | 654 | SMART | rrm1_1 | 121 | 193 | IPR000504 | GO:0003723(InterPro) | |
Hepe07g0453 | 654 | SMART | rrm1_1 | 212 | 284 | IPR000504 | GO:0003723(InterPro) | |
Hepe07g0453 | 654 | SMART | rrm1_1 | 33 | 106 | IPR000504 | GO:0003723(InterPro) | |
Hepe07g0453 | 654 | FunFam | Polyadenylate-binding protein | 551 | 633 | - | - | |
Hepe07g0453 | 654 | FunFam | Polyadenylate-binding protein | 202 | 296 | - | - | |
Hepe07g0453 | 654 | SUPERFAMILY | RNA-binding domain, RBD | 32 | 201 | IPR035979 | GO:0003676(InterPro) | |
Hepe07g0453 | 654 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 120 | 192 | IPR000504 | GO:0003723(InterPro) | |
Hepe07g0453 | 654 | FunFam | Polyadenylate-binding protein | 18 | 117 | - | - | |
Hepe07g0453 | 654 | MobiDBLite | consensus disorder prediction | 477 | 496 | - | - | |
Hepe07g0453 | 654 | Pfam | RNA recognition motif | 34 | 104 | IPR000504 | GO:0003723(InterPro) | |
Hepe07g0453 | 654 | Pfam | RNA recognition motif | 316 | 384 | IPR000504 | GO:0003723(InterPro) | |
Hepe07g0453 | 654 | Pfam | RNA recognition motif | 213 | 281 | IPR000504 | GO:0003723(InterPro) | |
Hepe07g0453 | 654 | Pfam | RNA recognition motif | 122 | 190 | IPR000504 | GO:0003723(InterPro) | |
Hepe07g0453 | 654 | NCBIfam | polyadenylate binding protein, human types 1, 2, 3, 4 family | 33 | 628 | IPR006515 | GO:0003723(InterPro) | |
Hepe07g0453 | 654 | FunFam | Polyadenylate-binding protein | 118 | 201 | - | - | |
Hepe07g0453 | 654 | PANTHER | RNA BINDING PROTEIN | 22 | 213 | - | GO:0003723(PANTHER)|GO:0003730(PANTHER)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0008143(PANTHER)|GO:0008266(PANTHER)|GO:1990904(PANTHER) | |
Hepe07g0453 | 654 | SMART | poly_2 | 567 | 630 | IPR002004 | GO:0003723(InterPro) | |
Hepe07g0453 | 654 | SMART | rrm2_1 | 212 | 284 | IPR003954 | GO:0003676(InterPro) | |
Hepe07g0453 | 654 | SMART | rrm2_1 | 315 | 387 | IPR003954 | GO:0003676(InterPro) | |
Hepe07g0453 | 654 | SMART | rrm2_1 | 121 | 193 | IPR003954 | GO:0003676(InterPro) | |
Hepe07g0453 | 654 | SMART | rrm2_1 | 33 | 106 | IPR003954 | GO:0003676(InterPro) | |
Hepe07g0453 | 654 | Gene3D | - | 297 | 400 | IPR012677 | - | |
Hepe07g0453 | 654 | CDD | RRM2_I_PABPs | 118 | 194 | IPR045305 | - | |
Hepe07g0453 | 654 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 314 | 391 | IPR000504 | GO:0003723(InterPro) | |
Hepe07g0453 | 654 | Gene3D | - | 551 | 632 | - | - | |
Hepe07g0453 | 654 | Pfam | Poly-adenylate binding protein, unique domain | 562 | 627 | IPR002004 | GO:0003723(InterPro) | |
Hepe07g0453 | 654 | SUPERFAMILY | PABC (PABP) domain | 498 | 647 | IPR036053 | GO:0003723(InterPro) | |
Hepe07g0453 | 654 | ProSiteProfiles | Poly(A)-binding protein C-terminal (PABC) domain profile. | 555 | 632 | IPR002004 | GO:0003723(InterPro) | |
Hepe07g0453 | 654 | SUPERFAMILY | RNA-binding domain, RBD | 211 | 395 | IPR035979 | GO:0003676(InterPro) | |
Hepe07g0453 | 654 | CDD | RRM4_I_PABPs | 313 | 391 | - | - | |
Hepe07g0453 | 654 | Gene3D | - | 122 | 193 | IPR012677 | - | |
Hepe07g0453 | 654 | Gene3D | - | 197 | 296 | IPR012677 | - | |
Hepe07g0453 | 654 | Gene3D | - | 1 | 121 | IPR012677 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Hepe02g2823 | Hepe-Chr2:77316626 | Hepe07g0453 | Hepe-Chr7:4693582 | 3.87e-232 | dispersed | |
Hepe05g1305 | Hepe-Chr5:61158519 | Hepe07g0453 | Hepe-Chr7:4693582 | 1.54e-29 | dispersed | |
Hepe07g0453 | Hepe-Chr7:4693582 | Hepe08g1069 | Hepe-Chr8:10395109 | 6.52e-19 | dispersed | |
Hepe03g1070 | Hepe-Chr3:60556255 | Hepe07g0453 | Hepe-Chr7:4693582 | 1.67e-14 | transposed | |
Hepe05g0317 | Hepe-Chr5:3919342 | Hepe07g0453 | Hepe-Chr7:4693582 | 1.57e-149 | transposed | |
Hepe02g0597 | Hepe-Chr2:6124328 | Hepe07g0453 | Hepe-Chr7:4693582 | 0.0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Hepe07g0453 | K13126 | - | csv:101219802 | 1137.09 |