Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe07g0479 ATGTCGTTCCGAAGCATAGTTCGTGATGTGAGGGATAGCATTGGGAGCTTATCTAGACGGGGTTTCGAGGTCAAGTTGAGTGGCCATCATAGAGGAAAGTCCATTGCATCCGCGTTAAATGATCTACACGACCAGCCTCCTGTTGTTCAGAATGGATGCTGGGCTAGTCTTCCACCCGAGCTGTTGTTCGATGTCATTCGAAGACTTGAAGAGAGTGAAAACACATGGCCTTCACGAAGGAATGTCGTTGCTTGTGCTGCAGTATGCCGTTCTTGGCGAATTATGTGCATGGAGATAGTTAGAGGCCCGGAAATTTGTGGGAAACTTACCTTCCCAGTGTCACTGAAGCAGCCAGGACCGCGCGATGGTTCCGTACAGTGCTTCATTAAGAGGGATAAATCCAACCTAACATACCACCTCTACTTGTGTCTTAGCCCTGCTCTGCTGGTTGAAAATGGGAAGTTTCTTCTTTCTGCAAAGCGGACGCGAAGAACTACTAGCACAGAGTATATTATCTCGATGGATGCAGATAACATTTCGAGATCAAGTAGCACTTACATCGGGAAGCTGAGGTCGAATTTTCTTGGAACAAAATTCATTGTCTATGATACTCAACCTCCATACACCGCTGCCCCTCTTCCTCCTCCCGGGAAAACTAGCCGTAGATTTTATTCAAAAAAGGTTTCGCCAAAAGTCCCGAATGGCAGTTACAACATAGCCCATATAAGTTATGAACTAAACGTCTTAGGCACACGAGGACCCCGAAGAATGCATTGTATAATGCATTCGATACCGGTGTCATCTCTCGATGCAGGCGGTACCGTTCCAGGCCAACCCGAGCTCCTCCCTCCCAACTCCCTCGACGACTCGTTTCGGAGTGCATCATTCTCCAAAACACTAGATCATTCCATGGAGTTCAGTAGTGCTAGATTTTCCGAAATCGGGAGAGCAGCCTTGGATGGAGACGAGGAGGGAAAGATGAGACCTTTGATTCTTAAAAACAAGCCCCCAAGATGGCACGAACAGCTGCAATGTTGGTGCCTCAACTTTCGTGGGCGGGTAACCGTTGCATCGGTTAAGAACTTCCAGTTGATCGCCGCAACACAGCCAGCTGCTGGTGCTCCAACGCCGTCTCAACCAGGTCCTCCAGAGCACGACAAGATCATTCTGCAATTCGGGAAGGTCGGTAAAGACATGTTCACGATGGACTATCGATATCCGCTCTCGGCTTTTCAGGCCTTTGCAATGTGCTTGAGCAGCTTTGATACTAAATTGGCTTGTGAATAA 1287 48.17 MSFRSIVRDVRDSIGSLSRRGFEVKLSGHHRGKSIASALNDLHDQPPVVQNGCWASLPPELLFDVIRRLEESENTWPSRRNVVACAAVCRSWRIMCMEIVRGPEICGKLTFPVSLKQPGPRDGSVQCFIKRDKSNLTYHLYLCLSPALLVENGKFLLSAKRTRRTTSTEYIISMDADNISRSSSTYIGKLRSNFLGTKFIVYDTQPPYTAAPLPPPGKTSRRFYSKKVSPKVPNGSYNIAHISYELNVLGTRGPRRMHCIMHSIPVSSLDAGGTVPGQPELLPPNSLDDSFRSASFSKTLDHSMEFSSARFSEIGRAALDGDEEGKMRPLILKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPAAGAPTPSQPGPPEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAMCLSSFDTKLACE 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4924730 4928660 - Hsped.07g04790.1 Hepe07g0479 573874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe07g0479 428 ProSitePatterns Tub family signature 1. 350 363 IPR018066 -
Hepe07g0479 428 SUPERFAMILY Tubby C-terminal domain-like 103 428 IPR025659 -
Hepe07g0479 428 Gene3D Tubby Protein; Chain A 113 422 IPR025659 -
Hepe07g0479 428 Pfam F-box-like 54 97 IPR001810 GO:0005515(InterPro)
Hepe07g0479 428 SUPERFAMILY F-box domain 45 97 IPR036047 GO:0005515(InterPro)
Hepe07g0479 428 Pfam Tub family 115 423 IPR000007 -
Hepe07g0479 428 CDD F-box_AtTLP-like 54 98 - -
Hepe07g0479 428 PANTHER TUBBY-RELATED 44 427 - -
Hepe07g0479 428 FunFam Tubby-like F-box protein 111 428 - -
Hepe07g0479 428 Gene3D - 49 101 - -
Hepe07g0479 428 PRINTS Tubby superfamily signature 236 263 IPR000007 -
Hepe07g0479 428 PRINTS Tubby superfamily signature 406 428 IPR000007 -
Hepe07g0479 428 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Hepe07g0479 428 PRINTS Tubby superfamily signature 350 366 IPR000007 -
Hepe07g0479 428 PRINTS Tubby superfamily signature 332 349 IPR000007 -
Hepe07g0479 428 PRINTS Tubby superfamily signature 385 404 IPR000007 -
Hepe07g0479 428 PRINTS Tubby superfamily signature 186 210 IPR000007 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe05g1485 Hepe-Chr5:64291328 Hepe07g0479 Hepe-Chr7:4924730 7.44e-147 dispersed
Hepe07g0479 Hepe-Chr7:4924730 Hepe10g1960 Hepe-Chr10:56548708 5.29e-237 dispersed
Hepe07g0479 Hepe-Chr7:4924730 Hepe07g0731 Hepe-Chr7:8734820 3.40e-150 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55905 PF01167 Tub 4.00E-116 CL0395 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe07g0479 K19600 - csv:101216314 838.18