Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe07g0540 ATGAGCAACGAATATGATTATTTGTTCAAGCTCTTGCTAATCGGCGACTCGTCCGTCGGAAAATCGTGTCTTCTTCTCAGATTTGCGGATGATTCCTATGTGGATAGCTATATAAGTACAATTGGAGTTGATTTTAAAATCAGAACTGTGGAGCTGGATGGAAAGACCATTAAGCTCCAGATTTGGGACACTGCTGGTCAGGAGAGATTCAGAACCATAACAAGCAGCTATTACAGAGGAGCACATGGAATAATTATTGTTTATGATGTCACTGAGATGGAGAGCTTTAACAACGTCAAACAATGGCTGAATGAGATTGATAGATATGCTAATGACAGTGTATGCAAGCTTTTAGTAGGAAATAAGTGTGATTTAGTTGAAAACAAGGTTGTTGACACACAGACAGCGAAGGCATTTGCAGACGAGCTCGGAATCCCTTTTCTAGAGACGAGTGCAAAAGACTCGATCAACGTGGAGCAAGCTTTCTTAACTATGGCTGCTGAAATAAAGAAAAAAATGGGGAGCCAGCCAACTTCGTCCAAGTCGTCGGGGAGTGTGCAAATTAAGGGGCAGCCAATTGAGCAAAAGAGCAGCTGTTGCAGTTGA 606 42.08 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKQWLNEIDRYANDSVCKLLVGNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIKKKMGSQPTSSKSSGSVQIKGQPIEQKSSCCS 201
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5704211 5708908 - Hsped.07g05400.1 Hepe07g0540 573935

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe07g0540 201 ProSiteProfiles small GTPase Rab1 family profile. 4 200 - -
Hepe07g0540 201 SMART ran_sub_2 14 199 - -
Hepe07g0540 201 Pfam Ras family 10 170 IPR001806 GO:0003924(InterPro)|GO:0005525(InterPro)
Hepe07g0540 201 ProSiteProfiles small GTPase Rho family profile. 2 170 - -
Hepe07g0540 201 SMART ras_sub_4 6 172 - -
Hepe07g0540 201 PANTHER RAS-RELATED PROTEIN RAB 7 198 IPR050227 GO:0016192(PANTHER)
Hepe07g0540 201 SMART rab_sub_5 9 172 - -
Hepe07g0540 201 FunFam Ras GTP-binding protein YPT1 2 201 - -
Hepe07g0540 201 SMART rho_sub_3 11 170 IPR001806 GO:0003924(InterPro)|GO:0005525(InterPro)
Hepe07g0540 201 MobiDBLite consensus disorder prediction 173 201 - -
Hepe07g0540 201 ProSiteProfiles small GTPase Arf family profile. 2 201 - -
Hepe07g0540 201 ProSiteProfiles small GTPase Ras family profile. 1 201 IPR001806 GO:0003924(InterPro)|GO:0005525(InterPro)
Hepe07g0540 201 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 186 IPR027417 -
Hepe07g0540 201 SMART arf_sub_2 1 173 - -
Hepe07g0540 201 Gene3D - 1 200 IPR027417 -
Hepe07g0540 201 PRINTS Transforming protein P21 ras signature 9 30 - -
Hepe07g0540 201 PRINTS Transforming protein P21 ras signature 112 125 - -
Hepe07g0540 201 PRINTS Transforming protein P21 ras signature 147 169 - -
Hepe07g0540 201 PRINTS Transforming protein P21 ras signature 32 48 - -
Hepe07g0540 201 PRINTS Transforming protein P21 ras signature 50 72 - -
Hepe07g0540 201 NCBIfam small GTP-binding protein domain 7 164 IPR005225 GO:0005525(InterPro)
Hepe07g0540 201 CDD Rab1_Ypt1 7 172 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe07g0540 K07874 - - csv:101208844 383.259
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe06g1706 Hepe-Chr6:68081645 Hepe07g0540 Hepe-Chr7:5704211 1.14e-113 dispersed
Hepe06g1735 Hepe-Chr6:68434640 Hepe07g0540 Hepe-Chr7:5704211 4.69e-44 dispersed
Hepe07g0292 Hepe-Chr7:2969094 Hepe07g0540 Hepe-Chr7:5704211 7.08e-112 dispersed
Hepe07g0540 Hepe-Chr7:5704211 Hepe08g0809 Hepe-Chr8:7274744 2.13e-79 dispersed
Hepe07g0536 Hepe-Chr7:5678412 Hepe07g0540 Hepe-Chr7:5704211 4.78e-59 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g399 Blo03g00605 . . . . . . . . . . . . . . . . . . . . . . . Cla10g00587 Cam10g0572 Cec10g0605 Cco10g0581 Clacu10g0606 Cmu10g1418 Cre10g0819 . . . . . . . . . . . . . . . . . . . . . . . . . Bhi11g00693 Tan01g1634 . . Hepe07g0540 Mch10g1151 . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000372 4 4 3 4 4 4 6 4 4 4 4 4 4 3 4 5 4 7 6 4 4 4 4 4 3 3 4 5 6 2 125