Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Hepe07g0546 | ATGGTTCATACTGGTGCATGCATTGCCTCATTACTGGGACAAGGAGGCTCTCGTAAATACCGCTTGACTTGGAAATGGCTCAGATACTTCAAAAATGATAGGGACAGGCGGGATTTGATCACTTGTGGTGCAGGAGCTGGTGTAGCAGCTGCCTTTCGGGCTCCAGTTGGTGGCGTTCTCTTCGCACTCGAAGAAGCAGCTTCATGGTGGAGGAGTGCTCTTCTCTGGAGGACCTTTTTCACTACTGCTGTAGTAGCCGTTGTCTTGAGGAGTTTCATGGAATTTTGCCGAGGGGGAAAATGTGGGTTATTTGGTGAAGGAGGTCTCATCATGTTCAACATCCATACAGAAAAGTCCTCTTACGGCATTCCAGATCTTATTGCAATTGTTATACTTGGAGTTTTTGGTGGTGTTCTTGGAAGCCTTTACAACTATCTCGTGGATAAGGTCCTCCGAACCTACAGCATCATAAATGAGCGAGGTCCCGGATCGAAAGTCATCCTTGTTGTTGTCATTTCCCTATTGACAACATGTGTTTCATTTGGTCTTCCTTGGTTCTCACGATGTTTACCTTGCCCACCTGGTTTGGTTGATCAATGCCCGACCATTGGTCGCTCAGGAAACTACAAGAACTTCCAATGCCCATCCGGCCATTATAATGATCTTGCTTCTTTATTTTTCAATACGAATGATGATGCCATTCGGAATCTGTTCATATCCGCTACTGACAAGCAATATCAGCTCTCCTCACTTTTTACCTTCTTTGCTGCTATCTATTGTCTTGGCATTATTACTTATGGCATTGCCTTGCCCTCGGGGCTCTTCATTCCTGTAATACTGGCAGGGGCCTCTTATGGCCGCATTGTAGGTAGATTGTTCGGTTCAGTTGCTACTCTTGATGTTGGTCTCTATGCCCTTCTCGGAGCTGCATCCTTCCTTGGTGGCACTATGAGAATGACTGTTTCTCTATGTGTCATTCTCCTTGAGCTTACGAATAACCTTTTGACGCTTCCATTACTAATGCTGGTTCTTCTGATTTCAAAGTCCGTGGCAGATCTTTTTAATAAAGGTGTCTATGATCAGATCATGAAGATGAAGGGACTACCTTTTATGGAAGCCCATGCAGAGCCATTTATGAGGCAATTGGTTGCTGGTGGTGTGGCTTCTGGTCCCTTAATTACCTTCTATGGGATCGAAAAGGTCGATAACATTATCAACGCGTTGAAAATGACAAACCACAATGGATTTCCTGTAATCGACCAACCGCCTTTCTCAGATGGTACAGAGCTTTGTGGGCTTGCTCTGAGGTCTCATCTGCTTGTTTTGCTTAAAGAAAAAAAATTTACGAAGCAAAAGGCATCAATTAGATCAGAAGTTTTGAGAACCTTCAAAGCACATGATTTTGCAAAAGCAGGTTCTGGCAAAGGGGTGAAGCTGGAAGATTTGGACATCAACGAGGAGGAGATGGAAATGTTTGTTGATCTTCATCCCATTACAAATACGTCGCCCTACACTGTGGTAGAAACAATGTCGCTAGCTAAAGCGGCGATTCTCTTTCACGCGCTCGGCTTGAGGCATTTGTTGGTGGTTCCGAAGACACCCGGGAGGCCTCCAATTGTTGGAATTCTTACAAGGCACGACTTCGTGCCCGAACATATTCTGGGACTTTACCCGCACCTCATCCCCAATGAGTAG | 1695 | 45.19 | MVHTGACIASLLGQGGSRKYRLTWKWLRYFKNDRDRRDLITCGAGAGVAAAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAVVLRSFMEFCRGGKCGLFGEGGLIMFNIHTEKSSYGIPDLIAIVILGVFGGVLGSLYNYLVDKVLRTYSIINERGPGSKVILVVVISLLTTCVSFGLPWFSRCLPCPPGLVDQCPTIGRSGNYKNFQCPSGHYNDLASLFFNTNDDAIRNLFISATDKQYQLSSLFTFFAAIYCLGIITYGIALPSGLFIPVILAGASYGRIVGRLFGSVATLDVGLYALLGAASFLGGTMRMTVSLCVILLELTNNLLTLPLLMLVLLISKSVADLFNKGVYDQIMKMKGLPFMEAHAEPFMRQLVAGGVASGPLITFYGIEKVDNIINALKMTNHNGFPVIDQPPFSDGTELCGLALRSHLLVLLKEKKFTKQKASIRSEVLRTFKAHDFAKAGSGKGVKLEDLDINEEEMEMFVDLHPITNTSPYTVVETMSLAKAAILFHALGLRHLLVVPKTPGRPPIVGILTRHDFVPEHILGLYPHLIPNE | 564 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 5778568 | 5785865 | + | Hsped.07g05460.1 | Hepe07g0546 | 573941 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Hepe07g0546 | 564 | PANTHER | CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER | 1 | 552 | IPR051280 | GO:0009705(PANTHER)|GO:0015108(PANTHER)|GO:0043231(PANTHER) | |
| Hepe07g0546 | 564 | Pfam | CBS domain | 499 | 549 | IPR000644 | - | |
| Hepe07g0546 | 564 | SUPERFAMILY | Clc chloride channel | 1 | 373 | IPR014743 | - | |
| Hepe07g0546 | 564 | Gene3D | Clc chloride channel | 1 | 372 | - | - | |
| Hepe07g0546 | 564 | PRINTS | Chloride channel signature | 45 | 64 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Hepe07g0546 | 564 | PRINTS | Chloride channel signature | 302 | 318 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Hepe07g0546 | 564 | PRINTS | Chloride channel signature | 270 | 290 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Hepe07g0546 | 564 | PRINTS | Chloride channel signature | 358 | 372 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Hepe07g0546 | 564 | PRINTS | Chloride channel signature | 320 | 339 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Hepe07g0546 | 564 | Pfam | Voltage gated chloride channel | 1 | 351 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Hepe07g0546 | 564 | ProSiteProfiles | CBS domain profile. | 498 | 561 | IPR000644 | - | |
| Hepe07g0546 | 564 | CDD | CBS_pair_voltage-gated_CLC_euk_bac | 374 | 551 | - | - | |
| Hepe07g0546 | 564 | PRINTS | Plant CLC chloride channel signature | 66 | 74 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Hepe07g0546 | 564 | PRINTS | Plant CLC chloride channel signature | 98 | 105 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Hepe07g0546 | 564 | PRINTS | Plant CLC chloride channel signature | 80 | 90 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Hepe07g0546 | 564 | PRINTS | Plant CLC chloride channel signature | 222 | 238 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Hepe07g0546 | 564 | Gene3D | - | 398 | 548 | IPR046342 | - | |
| Hepe07g0546 | 564 | SUPERFAMILY | CBS-domain pair | 375 | 549 | IPR046342 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Hepe07g0546 | Hepe-Chr7:5778568 | Hepe08g2504 | Hepe-Chr8:66312765 | 1.50e-246 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Hepe07g0546 | K05016 | - | csv:101209987 | 964.911 |