Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Hepe07g0556 | ATGGAGGGAATGCCGCACCCAATACCCCGTACAGTGGAGGAAGTCTACAGCGACTTCAAAGGCAGACGTGCCGGCTTGATCAAAGCTCTCACCGCTGATGTTGAGAAGTTTTACCAGCAGTGCGATCCTGAGAAGGAGAACTTGTGTCTCTATGGACTTCCAAATGAAACGTGGGAAGTTAACTTGCCTGTGGAGGAAGTGCCTCCTGAGCTTCCGGAACCAGCATTAGGTATAAACTTTGCTAGAGATGGGATGCAGGAGAAAGACTGGTTATCGCTGGTTGCAGTTCACAGTGACTCATGGTTGCTTGCTGTTGCATTCTATTTTGGTGCACGTTTTGGGTTTGGGAAGAATGAAAGGAAGAGGCTATTCCAGCTGATCAACGATCTCCCAAGTGTATTTGAAGTTGTGAGTGGAAATGGTAAGCAGTCAAAAGAACAGTCTGCCACTCATAACAATAGCAGCAAAAGCAAGTCGAGTGGGAAGATGCAGCAGCAGTCCCGGCAATTGGAGTCCCATAGCAAGGGAGTGAAGATGTCTCCACCGCCGAAAGAGGATGAAGATAGCGGGGACGAGGAGGAGGAAGAAGAAGATGACGAACAGGGTGCAACATGTGGGGCTTGTGGGGACAACTACGGCAACGACGAATTCTGGATTTGTTGTGATATTTGTGAAAGATGGTTCCATGGAAAATGTGTGAAGATTACACCTGCAAAGGCCGAGCATATCAAGCAATACAAGTGTCCAAGTTGCAGTAACAAGAGGGCAAGGGTTTGA | 777 | 48.13 | MEGMPHPIPRTVEEVYSDFKGRRAGLIKALTADVEKFYQQCDPEKENLCLYGLPNETWEVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKRLFQLINDLPSVFEVVSGNGKQSKEQSATHNNSSKSKSSGKMQQQSRQLESHSKGVKMSPPPKEDEDSGDEEEEEEDDEQGATCGACGDNYGNDEFWICCDICERWFHGKCVKITPAKAEHIKQYKCPSCSNKRARV | 258 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 5941507 | 5947981 | - | Hsped.07g05560.1 | Hepe07g0556 | 573951 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Hepe07g0556 | 258 | MobiDBLite | consensus disorder prediction | 139 | 204 | - | - | |
Hepe07g0556 | 258 | SMART | PHD_3 | 204 | 252 | IPR001965 | - | |
Hepe07g0556 | 258 | MobiDBLite | consensus disorder prediction | 139 | 174 | - | - | |
Hepe07g0556 | 258 | MobiDBLite | consensus disorder prediction | 186 | 203 | - | - | |
Hepe07g0556 | 258 | ProSitePatterns | Zinc finger PHD-type signature. | 205 | 251 | IPR019786 | - | |
Hepe07g0556 | 258 | SUPERFAMILY | FYVE/PHD zinc finger | 193 | 255 | IPR011011 | - | |
Hepe07g0556 | 258 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 194 | 253 | IPR013083 | - | |
Hepe07g0556 | 258 | CDD | PHD_AL_plant | 205 | 254 | IPR044104 | - | |
Hepe07g0556 | 258 | PANTHER | CPG BINDING PROTEIN | 9 | 257 | IPR045104 | GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro) | |
Hepe07g0556 | 258 | FunFam | PHD finger alfin-like protein | 197 | 253 | - | - | |
Hepe07g0556 | 258 | Pfam | Alfin | 11 | 138 | IPR021998 | GO:0006355(InterPro)|GO:0042393(InterPro) | |
Hepe07g0556 | 258 | ProSiteProfiles | Zinc finger PHD-type profile. | 202 | 254 | IPR019787 | - | |
Hepe07g0556 | 258 | Pfam | PHD-finger | 205 | 251 | IPR019787 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Hepe03g1442 | Hepe-Chr3:71188956 | Hepe07g0556 | Hepe-Chr7:5941507 | 2.00e-115 | dispersed | |
Hepe07g0556 | Hepe-Chr7:5941507 | Hepe08g2683 | Hepe-Chr8:68852467 | 2.36e-118 | dispersed | |
Hepe07g0556 | Hepe-Chr7:5941507 | Hepe08g1423 | Hepe-Chr8:16817032 | 5.22e-123 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
55910 | PF12165 | Alfin | 4.30E-68 | No_clan | Hepe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Hepe07g0556 | K26274 | - | csv:101212601 | 467.618 |