Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe07g0556 ATGGAGGGAATGCCGCACCCAATACCCCGTACAGTGGAGGAAGTCTACAGCGACTTCAAAGGCAGACGTGCCGGCTTGATCAAAGCTCTCACCGCTGATGTTGAGAAGTTTTACCAGCAGTGCGATCCTGAGAAGGAGAACTTGTGTCTCTATGGACTTCCAAATGAAACGTGGGAAGTTAACTTGCCTGTGGAGGAAGTGCCTCCTGAGCTTCCGGAACCAGCATTAGGTATAAACTTTGCTAGAGATGGGATGCAGGAGAAAGACTGGTTATCGCTGGTTGCAGTTCACAGTGACTCATGGTTGCTTGCTGTTGCATTCTATTTTGGTGCACGTTTTGGGTTTGGGAAGAATGAAAGGAAGAGGCTATTCCAGCTGATCAACGATCTCCCAAGTGTATTTGAAGTTGTGAGTGGAAATGGTAAGCAGTCAAAAGAACAGTCTGCCACTCATAACAATAGCAGCAAAAGCAAGTCGAGTGGGAAGATGCAGCAGCAGTCCCGGCAATTGGAGTCCCATAGCAAGGGAGTGAAGATGTCTCCACCGCCGAAAGAGGATGAAGATAGCGGGGACGAGGAGGAGGAAGAAGAAGATGACGAACAGGGTGCAACATGTGGGGCTTGTGGGGACAACTACGGCAACGACGAATTCTGGATTTGTTGTGATATTTGTGAAAGATGGTTCCATGGAAAATGTGTGAAGATTACACCTGCAAAGGCCGAGCATATCAAGCAATACAAGTGTCCAAGTTGCAGTAACAAGAGGGCAAGGGTTTGA 777 48.13 MEGMPHPIPRTVEEVYSDFKGRRAGLIKALTADVEKFYQQCDPEKENLCLYGLPNETWEVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKRLFQLINDLPSVFEVVSGNGKQSKEQSATHNNSSKSKSSGKMQQQSRQLESHSKGVKMSPPPKEDEDSGDEEEEEEDDEQGATCGACGDNYGNDEFWICCDICERWFHGKCVKITPAKAEHIKQYKCPSCSNKRARV 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5941507 5947981 - Hsped.07g05560.1 Hepe07g0556 573951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe07g0556 258 MobiDBLite consensus disorder prediction 139 204 - -
Hepe07g0556 258 SMART PHD_3 204 252 IPR001965 -
Hepe07g0556 258 MobiDBLite consensus disorder prediction 139 174 - -
Hepe07g0556 258 MobiDBLite consensus disorder prediction 186 203 - -
Hepe07g0556 258 ProSitePatterns Zinc finger PHD-type signature. 205 251 IPR019786 -
Hepe07g0556 258 SUPERFAMILY FYVE/PHD zinc finger 193 255 IPR011011 -
Hepe07g0556 258 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 194 253 IPR013083 -
Hepe07g0556 258 CDD PHD_AL_plant 205 254 IPR044104 -
Hepe07g0556 258 PANTHER CPG BINDING PROTEIN 9 257 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
Hepe07g0556 258 FunFam PHD finger alfin-like protein 197 253 - -
Hepe07g0556 258 Pfam Alfin 11 138 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
Hepe07g0556 258 ProSiteProfiles Zinc finger PHD-type profile. 202 254 IPR019787 -
Hepe07g0556 258 Pfam PHD-finger 205 251 IPR019787 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g1442 Hepe-Chr3:71188956 Hepe07g0556 Hepe-Chr7:5941507 2.00e-115 dispersed
Hepe07g0556 Hepe-Chr7:5941507 Hepe08g2683 Hepe-Chr8:68852467 2.36e-118 dispersed
Hepe07g0556 Hepe-Chr7:5941507 Hepe08g1423 Hepe-Chr8:16817032 5.22e-123 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55910 PF12165 Alfin 4.30E-68 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe07g0556 K26274 - csv:101212601 467.618