Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe07g0556 ATGGAGGGAATGCCGCACCCAATACCCCGTACAGTGGAGGAAGTCTACAGCGACTTCAAAGGCAGACGTGCCGGCTTGATCAAAGCTCTCACCGCTGATGTTGAGAAGTTTTACCAGCAGTGCGATCCTGAGAAGGAGAACTTGTGTCTCTATGGACTTCCAAATGAAACGTGGGAAGTTAACTTGCCTGTGGAGGAAGTGCCTCCTGAGCTTCCGGAACCAGCATTAGGTATAAACTTTGCTAGAGATGGGATGCAGGAGAAAGACTGGTTATCGCTGGTTGCAGTTCACAGTGACTCATGGTTGCTTGCTGTTGCATTCTATTTTGGTGCACGTTTTGGGTTTGGGAAGAATGAAAGGAAGAGGCTATTCCAGCTGATCAACGATCTCCCAAGTGTATTTGAAGTTGTGAGTGGAAATGGTAAGCAGTCAAAAGAACAGTCTGCCACTCATAACAATAGCAGCAAAAGCAAGTCGAGTGGGAAGATGCAGCAGCAGTCCCGGCAATTGGAGTCCCATAGCAAGGGAGTGAAGATGTCTCCACCGCCGAAAGAGGATGAAGATAGCGGGGACGAGGAGGAGGAAGAAGAAGATGACGAACAGGGTGCAACATGTGGGGCTTGTGGGGACAACTACGGCAACGACGAATTCTGGATTTGTTGTGATATTTGTGAAAGATGGTTCCATGGAAAATGTGTGAAGATTACACCTGCAAAGGCCGAGCATATCAAGCAATACAAGTGTCCAAGTTGCAGTAACAAGAGGGCAAGGGTTTGA 777 48.13 MEGMPHPIPRTVEEVYSDFKGRRAGLIKALTADVEKFYQQCDPEKENLCLYGLPNETWEVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKRLFQLINDLPSVFEVVSGNGKQSKEQSATHNNSSKSKSSGKMQQQSRQLESHSKGVKMSPPPKEDEDSGDEEEEEEDDEQGATCGACGDNYGNDEFWICCDICERWFHGKCVKITPAKAEHIKQYKCPSCSNKRARV 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5941507 5947981 - Hsped.07g05560.1 Hepe07g0556 573951

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe07g0556 258 MobiDBLite consensus disorder prediction 139 204 - -
Hepe07g0556 258 SMART PHD_3 204 252 IPR001965 -
Hepe07g0556 258 MobiDBLite consensus disorder prediction 139 174 - -
Hepe07g0556 258 MobiDBLite consensus disorder prediction 186 203 - -
Hepe07g0556 258 ProSitePatterns Zinc finger PHD-type signature. 205 251 IPR019786 -
Hepe07g0556 258 SUPERFAMILY FYVE/PHD zinc finger 193 255 IPR011011 -
Hepe07g0556 258 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 194 253 IPR013083 -
Hepe07g0556 258 CDD PHD_AL_plant 205 254 IPR044104 -
Hepe07g0556 258 PANTHER CPG BINDING PROTEIN 9 257 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
Hepe07g0556 258 FunFam PHD finger alfin-like protein 197 253 - -
Hepe07g0556 258 Pfam Alfin 11 138 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
Hepe07g0556 258 ProSiteProfiles Zinc finger PHD-type profile. 202 254 IPR019787 -
Hepe07g0556 258 Pfam PHD-finger 205 251 IPR019787 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe07g0556 K26274 - - csv:101212601 467.618
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g1442 Hepe-Chr3:71188956 Hepe07g0556 Hepe-Chr7:5941507 2.00e-115 dispersed
Hepe07g0556 Hepe-Chr7:5941507 Hepe08g2683 Hepe-Chr8:68852467 2.36e-118 dispersed
Hepe07g0556 Hepe-Chr7:5941507 Hepe08g1423 Hepe-Chr8:16817032 5.22e-123 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe07g0556 . 1 255 Alfin-like Transcription Factor Family AT1G14510 80.8 6.0e-110 394.0
Hepe08g1423 . 1 252 Alfin-like Transcription Factor Family AT1G14510 71.8 3.2e-95 345.1
Hepe03g1442 . 10 251 Alfin-like Transcription Factor Family AT1G14510 65.3 6.2e-91 330.9
Hepe08g2683 . 9 248 Alfin-like Transcription Factor Family AT1G14510 65.4 5.3e-90 327.8
Hepe01g0714 . 8 245 Alfin-like Transcription Factor Family AT1G14510 60.6 2.4e-79 292.4
Hepe05g0086 . 8 237 Alfin-like Transcription Factor Family AT1G14510 61.3 2.4e-79 292.4
Hepe08g1423 . 1 254 Alfin-like Transcription Factor Family AT5G26210 78.0 2.7e-110 395.2
Hepe08g2683 . 1 250 Alfin-like Transcription Factor Family AT5G26210 74.0 2.6e-105 378.6
Hepe03g1442 . 1 250 Alfin-like Transcription Factor Family AT5G26210 65.1 2.9e-96 348.6
Hepe07g0556 . 9 257 Alfin-like Transcription Factor Family AT5G26210 73.2 8.8e-93 337.0
Hepe01g0714 . 7 247 Alfin-like Transcription Factor Family AT5G26210 58.4 7.0e-82 300.8
Hepe05g0086 . 8 239 Alfin-like Transcription Factor Family AT5G26210 58.5 3.8e-80 295.0
Hepe08g1423 . 1 254 Alfin-like Transcription Factor Family AT3G42790 73.4 3.3e-100 361.7
Hepe08g2683 . 1 250 Alfin-like Transcription Factor Family AT3G42790 69.7 5.2e-98 354.4
Hepe03g1442 . 1 250 Alfin-like Transcription Factor Family AT3G42790 61.2 2.8e-91 332.0
Hepe07g0556 . 9 257 Alfin-like Transcription Factor Family AT3G42790 71.9 3.4e-89 325.1
Hepe01g0714 . 7 247 Alfin-like Transcription Factor Family AT3G42790 58.4 3.7e-80 295.0
Hepe05g0086 . 8 239 Alfin-like Transcription Factor Family AT3G42790 59.2 8.3e-80 293.9
Hepe01g0714 . 1 247 Alfin-like Transcription Factor Family AT5G05610 77.0 1.8e-111 399.1
Hepe05g0086 . 1 240 Alfin-like Transcription Factor Family AT5G05610 74.7 2.9e-106 381.7
Hepe08g1423 . 8 254 Alfin-like Transcription Factor Family AT5G05610 64.9 1.7e-90 329.3
Hepe03g1442 . 10 253 Alfin-like Transcription Factor Family AT5G05610 63.8 2.5e-89 325.5
Hepe08g2683 . 8 250 Alfin-like Transcription Factor Family AT5G05610 61.9 3.4e-86 315.1
Hepe07g0556 . 9 257 Alfin-like Transcription Factor Family AT5G05610 58.1 6.6e-82 300.8
Hepe01g0714 . 43 247 Alfin-like Transcription Factor Family AT3G11200 78.4 1.6e-93 339.3
Hepe05g0086 . 43 240 Alfin-like Transcription Factor Family AT3G11200 76.2 1.1e-86 316.6
Hepe08g1423 . 44 254 Alfin-like Transcription Factor Family AT3G11200 66.4 7.5e-75 277.3
Hepe03g1442 . 44 253 Alfin-like Transcription Factor Family AT3G11200 63.1 5.4e-73 271.2
Hepe08g2683 . 44 250 Alfin-like Transcription Factor Family AT3G11200 59.4 1.9e-70 262.7
Hepe07g0556 . 44 257 Alfin-like Transcription Factor Family AT3G11200 60.7 1.7e-66 249.6
Hepe07g0556 . 1 154 Alfin-like Transcription Factor Family AT2G02470 87.0 2.6e-76 282.3
Hepe08g1423 . 1 158 Alfin-like Transcription Factor Family AT2G02470 78.5 2.0e-65 246.1
Hepe08g2683 . 9 166 Alfin-like Transcription Factor Family AT2G02470 74.1 1.9e-63 239.6
Hepe03g1442 . 10 158 Alfin-like Transcription Factor Family AT2G02470 74.5 1.4e-61 233.4
Hepe01g0714 . 8 155 Alfin-like Transcription Factor Family AT2G02470 70.2 3.3e-55 212.2
Hepe05g0086 . 8 175 Alfin-like Transcription Factor Family AT2G02470 62.4 1.6e-54 209.9
Hepe08g1423 . 1 167 Alfin-like Transcription Factor Family AT5G20510 78.0 1.2e-73 273.1
Hepe03g1442 . 1 164 Alfin-like Transcription Factor Family AT5G20510 75.4 3.0e-69 258.5
Hepe08g2683 . 1 160 Alfin-like Transcription Factor Family AT5G20510 73.9 5.6e-68 254.2
Hepe07g0556 . 3 152 Alfin-like Transcription Factor Family AT5G20510 73.5 9.2e-63 236.9
Hepe01g0714 . 7 163 Alfin-like Transcription Factor Family AT5G20510 63.8 1.2e-54 209.9
Hepe05g0086 . 4 157 Alfin-like Transcription Factor Family AT5G20510 61.9 7.3e-52 200.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000240 6 20 6 5 4 4 8 4 4 3 3 4 4 3 3 7 4 8 7 3 3 4 4 4 5 2 5 11 7 4 159
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55910 PF12165 Alfin 4.30E-68 No_clan Hepe TF