Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe07g0569 ATGGCTCCCCAAACTAATTGGCTTTCCTTCTCACTTTCTCCCATTGAAATGCTTCGCTCTGCTGAATCTCAGTTTCTTCCTTATGAAACTGAAGCTTCCTCCACTGCTTCTCCTCACTATCTCTTGGACAATTTCTACTCCAATAATAATGGATGGAGTAATAACAATACTAATTCTCATCCAAAATCCTCCCAACTTTTCTTCATGGATGGAGAAGAAAATAATGAAGTTGTGAAAGAAGATCATCATCTTAATCCGCCGACCATTTTCAATAGCTTTCTTCATCCACAAATCCACCACCACCACCAACCGAAGCTGGAGGATTTTCTCGGCGATTCCTCGCCGATGGTGCGATATTCCGACAGTCAAACGGACACTCAAGATTCGTCGTCTTTGACTCATCTTTACGACCATGGCGCCTCTGCTTATTTTGCCGACCAACACGATTTCAAAACCATGGCGGCGTTTCAGGCTTTTTCTGCCAACTCCGGCTCCGATGTTGATGATTCCGCTTCTATTGCTAGAACCCAGATCGCCGCCGTCGCCGCCGAGATTCCCGCCGCCGCTGCTCATTCTATTGAGTCGTCGCTTAGAAATGAGTTGGGGAGTTTCTCTAACTGCCCCACCGGTGCTCTCTCGCTCGCCGTCTCTCACAGCTCCGACACGGCGGCGGCCACGACGGCTGTTGTGGCGGTTGATTCTGATTCGTCCAAGAAAATTGCTGATACTTTTGGGCAGCGAACTTCGATTTACAGAGGAGTTACTAGGCACAGATGGACGGGTAGATACGAAGCGCATCTATGGGATAACAGCTGTAGAAGAGAGGGTCAGGCTAGGAAAGGACGTCAAGTTTACTTAGGTGGGTATGATAAGGAAGAAAAAGCAGCTAGGGCTTATGATTTGGCAGCTTTGAAGTATTGGGGTCCCACTGCAACCACCAATTTTCCTGTTTCGAATTACGCCAAAGAATTGGAAGAGATGAAACATGTCACCAAACAAGAGTTCATTGCTTCTTTGCGAAGAAAAAGCAGCGGTTTCTCGAGGGGTGCGTCGATTTACCGAGGTGTAACGAGGCATCATCAGCAGGGTCGTTGGCAGGCGAGAATTGGCCGTGTGGCTGGGAATAAGGACCTGTATCTCGGGACGTTTGCTACTGAAGAGGAAGCAGCTGAGGCATACGATATTGCAGCGATCAAGTTCAGGGGTTTGAATGCGGTGACGAACTTCGAGATGAATCGATATGATGTGGAAGCAATTGCGAAGAGTGCGCTGCCGATTGGGGGAGCAGCGAAGAGGCTGAAGCTTTGCCTGGAAAACGAACAGAAACCGATTCTGAATCATGATCAAGCAGCGCAGTGCAGCAGTGGAAGCAACAGCATCAACTTCGGCGGCAGCATTCAGGCTGTGTCGCCCATCCCGTGTGGAATTCCATACGATACGGCGGTTATGTATCACCATAATTACTTCCATCATCTTCAACCTAATGCCATTGGTTCTTCGGAGTCGACGAGTCCATCCATTGCAGCGTCGACTGTGGCAGCTCCTCAAGCAGCCGAGTTTTTTGTTTGGCCTCACCAGTCGTATTAG 1587 48.83 MAPQTNWLSFSLSPIEMLRSAESQFLPYETEASSTASPHYLLDNFYSNNNGWSNNNTNSHPKSSQLFFMDGEENNEVVKEDHHLNPPTIFNSFLHPQIHHHHQPKLEDFLGDSSPMVRYSDSQTDTQDSSSLTHLYDHGASAYFADQHDFKTMAAFQAFSANSGSDVDDSASIARTQIAAVAAEIPAAAAHSIESSLRNELGSFSNCPTGALSLAVSHSSDTAAATTAVVAVDSDSSKKIADTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQVYLGGYDKEEKAARAYDLAALKYWGPTATTNFPVSNYAKELEEMKHVTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGLNAVTNFEMNRYDVEAIAKSALPIGGAAKRLKLCLENEQKPILNHDQAAQCSSGSNSINFGGSIQAVSPIPCGIPYDTAVMYHHNYFHHLQPNAIGSSESTSPSIAASTVAAPQAAEFFVWPHQSY 528
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6096763 6102050 - Hsped.07g05690.1 Hepe07g0569 573964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe07g0569 528 FunFam AP2-like ethylene-responsive transcription factor 351 412 - -
Hepe07g0569 528 PRINTS Ethylene responsive element binding protein signature 392 412 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe07g0569 528 PRINTS Ethylene responsive element binding protein signature 251 262 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe07g0569 528 Gene3D AP2/ERF domain 352 412 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe07g0569 528 Gene3D AP2/ERF domain 250 318 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe07g0569 528 ProSiteProfiles AP2/ERF domain profile. 352 410 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe07g0569 528 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 141 446 - -
Hepe07g0569 528 FunFam AP2-like ethylene-responsive transcription factor ANT 249 318 - -
Hepe07g0569 528 ProSiteProfiles AP2/ERF domain profile. 250 316 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe07g0569 528 CDD AP2 351 410 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe07g0569 528 SUPERFAMILY DNA-binding domain 351 411 IPR016177 GO:0003677(InterPro)
Hepe07g0569 528 SUPERFAMILY DNA-binding domain 249 318 IPR016177 GO:0003677(InterPro)
Hepe07g0569 528 Pfam AP2 domain 251 308 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe07g0569 528 Pfam AP2 domain 353 402 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe07g0569 528 CDD AP2 249 318 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe07g0569 528 SMART rav1_2 352 416 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe07g0569 528 SMART rav1_2 250 322 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe07g0569 Hepe-Chr7:6096763 Hepe09g0476 Hepe-Chr9:4398524 3.38e-109 dispersed
Hepe07g0569 Hepe-Chr7:6096763 Hepe08g1924 Hepe-Chr8:51016520 4.52e-113 transposed
Hepe07g0569 Hepe-Chr7:6096763 Hepe08g1835 Hepe-Chr8:45654109 4.52e-113 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55912 PF00847 AP2 1.00E-12 CL0081 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe07g0569 K09285 - csv:101217714 787.719