Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe07g0578 ATGGCTACCGCTTTCTTCTTCTTCATTCTCGACGACAATGGCTATCGGATTATTCCGATGACCCCCGTAAGGAGATACCTAAGCAGCATCGACATCAACAATTCTTCGAGGCTATTCAACGTCACACTACAAAGAAAAGATGGATATGTTATAATGGACAATGGCATTGTCCAAGTTACTCTTTCAACTCCAGATGGTGACGTGGTCGGATTGAGCTACAATGGAATTGACAACATTCTTGAAACCAAAAACGAACACCAAAATAGAGGCTATTGGGACGCGGTATGGAACAAGCCAAACGAACCCATTAGCACAGACAGATTAAAAGGAAGGAAATTTGAAGTGATAATATGGAACGAGGAGCAATTAGAAATCTCATTTAACAAAACATGGAGTTTTGCAGTTGGGAACGAGACTGCCCCTGTAAATGTGGACAAAAGGTACGTATTGCTGAGAGGAAGCTCTGGATTTTATAGCTATGCAATATTCGAAAGGCCCACTGGATGGCCCGAGATTGAAATGGATCAAGTTAGGATTGTGTTCAAGCTTCAAAGCAAAATGTTTGATTATATGGCTGTATCGGACGTTAGGCAAAGGGTGATGCCGACGATGGAGGACCGTGAGAAGGGTGAGCCATTGGCGTATCCTGAGGCTGTTCTTTTGACCAATCCTGCCAATCAGAAACTCAGAGGAGAGGTGGATGACAAGTACCAGTACTCAGCAGAGGACAAAGACAACCAAGTTCACGGCTGGATCAGCAGCAATCCGCCGATGGGATTCTGGATGATCACTCCCAGCGACGAGTTCCGCGTCGCCGGTCCGGTCAAGCAGGATCTCACCTCCCACGCCGGCCCCATCACTCTCTCCATGTTCGTTAGCACCCACTACGCTGGAAAGGACATTGGCATGAAATTTGCAGCCGGAGAGCCCTGGAAGAAGGTCTTCGGCCCTGTATTTGTCTATCTCAACTCTGTTTCCCCTGCTGAGGATTCTCTTTCTCTATGGCAAGATGCCAAACAACAGTTGGCAATGGAAATCAATGAGTGGCCCTATACTTTTCCTCAATCTGATGACTTCCCTTCTTCTGCTCATAGAGGGAGCGTCGCTGGCCGGTTATTAGTCCGTGATCGCTACATCAGTAGCAGCCTTATGCATGCGAGTAATGCTTTCGTTGGATTGGCATTGCCTGGTCCTGTCGGATCTTGGCAAAGGGAAAGCAAGGGATATCAGTTCTGGACTCGAGCTGACAATCACGGCAACTTCTCAATAAAAAACATCCGAGCTGGGGTTTACAATCTGTATGCTTTTGTCCCTGGCTTCCTTGGAGATTACAAATACGAGGCAAATATTACTATCGAGTCTGGCTCTGAAATCAGATTGGATGTGTTGGTGTTTGATCCGCCGAGACAGGGCCCAACCATCTGGGAGATTGGCCTTCCCGACCGCACTGCGGCGGAGTTTTACGTGCCCGACCCTTATCCGACTCTCATGAATAAACTATACAACGGCGATCATGCTGACAAATTCAGACAATATGGCTTGTGGGAACGTTATGCGGCTATGCATCCAAATAATGATCTTGTGTTTACTGTGGGTGTGGATGATTATAGCAAGGACTGGTTCTATGCTCATGTTACCAGGGATGTGGGAAATCAAACATATGAAGCAACCACTTGGGAGATCAGATTTCTACTGCAATCTGTGAACCAAACTGCTAATTACACACTGCAAATTGCATTGGCATCTGCTGCTGAGAGCGAATTACAGGTTCGAGTGAATGGTCGAGGGTCGGACCGGGCCGCTTTCTCGACCGGGAGGATCGGAAAGGACAATGCAATTGCAAGGCATGGCATCCATGGACTTTACTGGTTATATTCCATACCTTTCGCTGGTGGTCAATTTGTGAAAGGGAACAACTCCATCTATCTCACTCAGGCAAGAAGCGAAAGCCCTTTCCCAGGAATCATGTATGACTATATTCGACTTGAAGCTCCACCTCTAACATGA 2007 46.94 MATAFFFFILDDNGYRIIPMTPVRRYLSSIDINNSSRLFNVTLQRKDGYVIMDNGIVQVTLSTPDGDVVGLSYNGIDNILETKNEHQNRGYWDAVWNKPNEPISTDRLKGRKFEVIIWNEEQLEISFNKTWSFAVGNETAPVNVDKRYVLLRGSSGFYSYAIFERPTGWPEIEMDQVRIVFKLQSKMFDYMAVSDVRQRVMPTMEDREKGEPLAYPEAVLLTNPANQKLRGEVDDKYQYSAEDKDNQVHGWISSNPPMGFWMITPSDEFRVAGPVKQDLTSHAGPITLSMFVSTHYAGKDIGMKFAAGEPWKKVFGPVFVYLNSVSPAEDSLSLWQDAKQQLAMEINEWPYTFPQSDDFPSSAHRGSVAGRLLVRDRYISSSLMHASNAFVGLALPGPVGSWQRESKGYQFWTRADNHGNFSIKNIRAGVYNLYAFVPGFLGDYKYEANITIESGSEIRLDVLVFDPPRQGPTIWEIGLPDRTAAEFYVPDPYPTLMNKLYNGDHADKFRQYGLWERYAAMHPNNDLVFTVGVDDYSKDWFYAHVTRDVGNQTYEATTWEIRFLLQSVNQTANYTLQIALASAAESELQVRVNGRGSDRAAFSTGRIGKDNAIARHGIHGLYWLYSIPFAGGQFVKGNNSIYLTQARSESPFPGIMYDYIRLEAPPLT 668
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
7 6237066 6244465 - Hsped.07g05780.1 Hepe07g0578 573973
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Hepe07g0578 668 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 39 666 IPR051850 -
Hepe07g0578 668 SUPERFAMILY Galactose mutarotase-like 47 330 IPR011013 GO:0003824(InterPro)|GO:0005975(InterPro)|GO:0030246(InterPro)
Hepe07g0578 668 SUPERFAMILY Starch-binding domain-like 396 463 IPR013784 GO:0030246(InterPro)
Hepe07g0578 668 FunFam Rhamnogalacturonate lyase B 361 460 - -
Hepe07g0578 668 Pfam Rhamnogalacturonate lyase family 41 233 IPR010325 -
Hepe07g0578 668 CDD RGL4_C 475 663 - -
Hepe07g0578 668 Gene3D - 39 333 IPR014718 GO:0030246(InterPro)
Hepe07g0578 668 CDD RGL4_N 49 331 - -
Hepe07g0578 668 SUPERFAMILY Galactose-binding domain-like 471 663 IPR008979 -
Hepe07g0578 668 Gene3D - 471 663 - -
Hepe07g0578 668 Gene3D - 361 463 - -
Hepe07g0578 668 CDD RGL4_M 365 460 IPR029413 -
Hepe07g0578 668 Pfam Polysaccharide lyase family 4, domain III 473 662 IPR029411 -
Hepe07g0578 668 Pfam Polysaccharide lyase family 4, domain II 387 459 IPR029413 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g1757 Hepe-Chr4:72569219 Hepe07g0578 Hepe-Chr7:6237066 5.41e-221 dispersed
Hepe07g0578 Hepe-Chr7:6237066 Hepe10g0445 Hepe-Chr10:5032406 8.42e-272 dispersed
Hepe04g1385 Hepe-Chr4:69514034 Hepe07g0578 Hepe-Chr7:6237066 2.34e-291 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe07g0578 K18195 - csv:101215252 1197.96