Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Hepe07g0578 | ATGGCTACCGCTTTCTTCTTCTTCATTCTCGACGACAATGGCTATCGGATTATTCCGATGACCCCCGTAAGGAGATACCTAAGCAGCATCGACATCAACAATTCTTCGAGGCTATTCAACGTCACACTACAAAGAAAAGATGGATATGTTATAATGGACAATGGCATTGTCCAAGTTACTCTTTCAACTCCAGATGGTGACGTGGTCGGATTGAGCTACAATGGAATTGACAACATTCTTGAAACCAAAAACGAACACCAAAATAGAGGCTATTGGGACGCGGTATGGAACAAGCCAAACGAACCCATTAGCACAGACAGATTAAAAGGAAGGAAATTTGAAGTGATAATATGGAACGAGGAGCAATTAGAAATCTCATTTAACAAAACATGGAGTTTTGCAGTTGGGAACGAGACTGCCCCTGTAAATGTGGACAAAAGGTACGTATTGCTGAGAGGAAGCTCTGGATTTTATAGCTATGCAATATTCGAAAGGCCCACTGGATGGCCCGAGATTGAAATGGATCAAGTTAGGATTGTGTTCAAGCTTCAAAGCAAAATGTTTGATTATATGGCTGTATCGGACGTTAGGCAAAGGGTGATGCCGACGATGGAGGACCGTGAGAAGGGTGAGCCATTGGCGTATCCTGAGGCTGTTCTTTTGACCAATCCTGCCAATCAGAAACTCAGAGGAGAGGTGGATGACAAGTACCAGTACTCAGCAGAGGACAAAGACAACCAAGTTCACGGCTGGATCAGCAGCAATCCGCCGATGGGATTCTGGATGATCACTCCCAGCGACGAGTTCCGCGTCGCCGGTCCGGTCAAGCAGGATCTCACCTCCCACGCCGGCCCCATCACTCTCTCCATGTTCGTTAGCACCCACTACGCTGGAAAGGACATTGGCATGAAATTTGCAGCCGGAGAGCCCTGGAAGAAGGTCTTCGGCCCTGTATTTGTCTATCTCAACTCTGTTTCCCCTGCTGAGGATTCTCTTTCTCTATGGCAAGATGCCAAACAACAGTTGGCAATGGAAATCAATGAGTGGCCCTATACTTTTCCTCAATCTGATGACTTCCCTTCTTCTGCTCATAGAGGGAGCGTCGCTGGCCGGTTATTAGTCCGTGATCGCTACATCAGTAGCAGCCTTATGCATGCGAGTAATGCTTTCGTTGGATTGGCATTGCCTGGTCCTGTCGGATCTTGGCAAAGGGAAAGCAAGGGATATCAGTTCTGGACTCGAGCTGACAATCACGGCAACTTCTCAATAAAAAACATCCGAGCTGGGGTTTACAATCTGTATGCTTTTGTCCCTGGCTTCCTTGGAGATTACAAATACGAGGCAAATATTACTATCGAGTCTGGCTCTGAAATCAGATTGGATGTGTTGGTGTTTGATCCGCCGAGACAGGGCCCAACCATCTGGGAGATTGGCCTTCCCGACCGCACTGCGGCGGAGTTTTACGTGCCCGACCCTTATCCGACTCTCATGAATAAACTATACAACGGCGATCATGCTGACAAATTCAGACAATATGGCTTGTGGGAACGTTATGCGGCTATGCATCCAAATAATGATCTTGTGTTTACTGTGGGTGTGGATGATTATAGCAAGGACTGGTTCTATGCTCATGTTACCAGGGATGTGGGAAATCAAACATATGAAGCAACCACTTGGGAGATCAGATTTCTACTGCAATCTGTGAACCAAACTGCTAATTACACACTGCAAATTGCATTGGCATCTGCTGCTGAGAGCGAATTACAGGTTCGAGTGAATGGTCGAGGGTCGGACCGGGCCGCTTTCTCGACCGGGAGGATCGGAAAGGACAATGCAATTGCAAGGCATGGCATCCATGGACTTTACTGGTTATATTCCATACCTTTCGCTGGTGGTCAATTTGTGAAAGGGAACAACTCCATCTATCTCACTCAGGCAAGAAGCGAAAGCCCTTTCCCAGGAATCATGTATGACTATATTCGACTTGAAGCTCCACCTCTAACATGA | 2007 | 46.94 | MATAFFFFILDDNGYRIIPMTPVRRYLSSIDINNSSRLFNVTLQRKDGYVIMDNGIVQVTLSTPDGDVVGLSYNGIDNILETKNEHQNRGYWDAVWNKPNEPISTDRLKGRKFEVIIWNEEQLEISFNKTWSFAVGNETAPVNVDKRYVLLRGSSGFYSYAIFERPTGWPEIEMDQVRIVFKLQSKMFDYMAVSDVRQRVMPTMEDREKGEPLAYPEAVLLTNPANQKLRGEVDDKYQYSAEDKDNQVHGWISSNPPMGFWMITPSDEFRVAGPVKQDLTSHAGPITLSMFVSTHYAGKDIGMKFAAGEPWKKVFGPVFVYLNSVSPAEDSLSLWQDAKQQLAMEINEWPYTFPQSDDFPSSAHRGSVAGRLLVRDRYISSSLMHASNAFVGLALPGPVGSWQRESKGYQFWTRADNHGNFSIKNIRAGVYNLYAFVPGFLGDYKYEANITIESGSEIRLDVLVFDPPRQGPTIWEIGLPDRTAAEFYVPDPYPTLMNKLYNGDHADKFRQYGLWERYAAMHPNNDLVFTVGVDDYSKDWFYAHVTRDVGNQTYEATTWEIRFLLQSVNQTANYTLQIALASAAESELQVRVNGRGSDRAAFSTGRIGKDNAIARHGIHGLYWLYSIPFAGGQFVKGNNSIYLTQARSESPFPGIMYDYIRLEAPPLT | 668 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 6237066 | 6244465 | - | Hsped.07g05780.1 | Hepe07g0578 | 573973 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Hepe07g0578 | 668 | PANTHER | RHAMNOGALACTURONATE LYASE FAMILY PROTEIN | 39 | 666 | IPR051850 | - | |
Hepe07g0578 | 668 | SUPERFAMILY | Galactose mutarotase-like | 47 | 330 | IPR011013 | GO:0003824(InterPro)|GO:0005975(InterPro)|GO:0030246(InterPro) | |
Hepe07g0578 | 668 | SUPERFAMILY | Starch-binding domain-like | 396 | 463 | IPR013784 | GO:0030246(InterPro) | |
Hepe07g0578 | 668 | FunFam | Rhamnogalacturonate lyase B | 361 | 460 | - | - | |
Hepe07g0578 | 668 | Pfam | Rhamnogalacturonate lyase family | 41 | 233 | IPR010325 | - | |
Hepe07g0578 | 668 | CDD | RGL4_C | 475 | 663 | - | - | |
Hepe07g0578 | 668 | Gene3D | - | 39 | 333 | IPR014718 | GO:0030246(InterPro) | |
Hepe07g0578 | 668 | CDD | RGL4_N | 49 | 331 | - | - | |
Hepe07g0578 | 668 | SUPERFAMILY | Galactose-binding domain-like | 471 | 663 | IPR008979 | - | |
Hepe07g0578 | 668 | Gene3D | - | 471 | 663 | - | - | |
Hepe07g0578 | 668 | Gene3D | - | 361 | 463 | - | - | |
Hepe07g0578 | 668 | CDD | RGL4_M | 365 | 460 | IPR029413 | - | |
Hepe07g0578 | 668 | Pfam | Polysaccharide lyase family 4, domain III | 473 | 662 | IPR029411 | - | |
Hepe07g0578 | 668 | Pfam | Polysaccharide lyase family 4, domain II | 387 | 459 | IPR029413 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Hepe04g1757 | Hepe-Chr4:72569219 | Hepe07g0578 | Hepe-Chr7:6237066 | 5.41e-221 | dispersed | |
Hepe07g0578 | Hepe-Chr7:6237066 | Hepe10g0445 | Hepe-Chr10:5032406 | 8.42e-272 | dispersed | |
Hepe04g1385 | Hepe-Chr4:69514034 | Hepe07g0578 | Hepe-Chr7:6237066 | 2.34e-291 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Hepe07g0578 | K18195 | - | csv:101215252 | 1197.96 |