Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe07g0601 ATGGAGTTCGAAGATCACGAGGAAGAAGATGAAATGGAAATAGAAACAACAACAAACTGCAACAACCACAACAGCAACAACAACAACAAACCACTTTCCCGACTCAACAAAAACCCGTCTCCGGTCCACACGAACCGCCCTCACCCGCTCTCCACCAAGCCCCCCTACAACTACAAAGAGTGCTTAAAAAACCACGCCGTCGCAGTCGGCGGGCATGCCCTCGACGGTTGCGGCGAGTTCATGCCCGCCGGACCCGACGGCTCTCTCGATGCCCTCAAATGCGCCGCCTGCAACTGCCACCGCAACTTCCACCGCAAGGACATTATTACTATCCCGAACGGCAACCGGGACCAATCACCGTTTGTGTCGTGTTGGCATGCCCCGACCGGGTACCTTCACGTGGCGCCGCAGCGGCAGATGCTGGCACTGCCGTCGCCTGCTGGAGACGACGGCAGTGGCAGCAGGAAGCGGCTGCGGACGAAGTTCACGGAGGAGCAGAAGGAAAAGATGGTGGTGATGGCGGAGAAACTGGATTGGAGGATTCAGAAGAGCGATGAAGCGGCGGTGATGGAATTTTGCAGTGAAATCGGGGTGAAGAGACGAGTGTTGAAGGTTTGGATGCATAACAACAAGAACACGTTTCGTAAGGAATCTCAAGAAATTAAATTTTCGTAA 675 54.37 MEFEDHEEEDEMEIETTTNCNNHNSNNNNKPLSRLNKNPSPVHTNRPHPLSTKPPYNYKECLKNHAVAVGGHALDGCGEFMPAGPDGSLDALKCAACNCHRNFHRKDIITIPNGNRDQSPFVSCWHAPTGYLHVAPQRQMLALPSPAGDDGSGSRKRLRTKFTEEQKEKMVVMAEKLDWRIQKSDEAAVMEFCSEIGVKRRVLKVWMHNNKNTFRKESQEIKFS 224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6600010 6600921 + Hsped.07g06010.1 Hepe07g0601 573996

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe07g0601 224 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 24 213 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Hepe07g0601 224 MobiDBLite consensus disorder prediction 1 15 - -
Hepe07g0601 224 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 57 107 IPR006456 -
Hepe07g0601 224 NCBIfam homeobox domain, ZF-HD class 155 212 IPR006455 -
Hepe07g0601 224 SUPERFAMILY Homeodomain-like 147 216 IPR009057 -
Hepe07g0601 224 Pfam ZF-HD protein dimerisation region 57 108 IPR006456 -
Hepe07g0601 224 MobiDBLite consensus disorder prediction 17 51 - -
Hepe07g0601 224 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 58 107 IPR006456 -
Hepe07g0601 224 FunFam Zinc-finger homeodomain protein 2 145 216 - -
Hepe07g0601 224 Gene3D - 145 216 - -
Hepe07g0601 224 MobiDBLite consensus disorder prediction 1 56 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe07g0601 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe07g0601 Hepe-Chr7:6600010 Hepe10g0451 Hepe-Chr10:5146378 3.32e-54 dispersed
Hepe07g2329 Hepe-Chr7:67622894 Hepe07g0601 Hepe-Chr7:6600010 1.99e-37 transposed
Hepe04g1409 Hepe-Chr4:69733318 Hepe07g0601 Hepe-Chr7:6600010 7.80e-57 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe07g0601 . 58 213 ZF-HD Transcription Factor Family AT4G24660 54.7 1.3e-47 186.8
Hepe07g1387 . 83 292 ZF-HD Transcription Factor Family AT2G02540 53.2 1.8e-52 203.4
Hepe07g1387 . 80 295 ZF-HD Transcription Factor Family AT1G14440 53.0 3.4e-54 209.1
Hepe02g1975 . 1 262 ZF-HD Transcription Factor Family AT5G15210 53.2 1.1e-53 207.2
Hepe02g2004 . 1 262 ZF-HD Transcription Factor Family AT5G15210 53.2 1.1e-53 207.2
Hepe02g3167 . 14 274 ZF-HD Transcription Factor Family AT5G15210 51.3 1.1e-48 190.7
Hepe02g1975 . 1 249 ZF-HD Transcription Factor Family AT3G28920 60.6 2.8e-61 232.6
Hepe02g2004 . 1 249 ZF-HD Transcription Factor Family AT3G28920 60.6 2.8e-61 232.6
Hepe02g3167 . 25 276 ZF-HD Transcription Factor Family AT3G28920 59.1 3.6e-56 215.7
Hepe02g1975 . 1 254 ZF-HD Transcription Factor Family AT5G39760 55.3 3.4e-52 202.6
Hepe02g2004 . 1 254 ZF-HD Transcription Factor Family AT5G39760 55.3 3.4e-52 202.6
Hepe02g3167 . 33 288 ZF-HD Transcription Factor Family AT5G39760 56.0 2.0e-49 193.4
Hepe10g1740 . 18 204 ZF-HD Transcription Factor Family AT1G69600 50.5 4.0e-47 185.3
Hepe07g1387 . 83 292 ZF-HD Transcription Factor Family AT2G02540 53.2 1.8e-52 203.4
Hepe07g0601 . 58 213 ZF-HD Transcription Factor Family AT4G24660 54.7 1.3e-47 186.8
Hepe02g1975 . 1 254 ZF-HD Transcription Factor Family AT5G39760 55.3 3.4e-52 202.6
Hepe02g2004 . 1 254 ZF-HD Transcription Factor Family AT5G39760 55.3 3.4e-52 202.6
Hepe02g3167 . 33 288 ZF-HD Transcription Factor Family AT5G39760 56.0 2.0e-49 193.4
Hepe10g1740 . 18 204 ZF-HD Transcription Factor Family AT1G69600 50.5 4.0e-47 185.3
Hepe02g1975 . 1 262 ZF-HD Transcription Factor Family AT5G15210 53.2 1.1e-53 207.2
Hepe02g2004 . 1 262 ZF-HD Transcription Factor Family AT5G15210 53.2 1.1e-53 207.2
Hepe02g3167 . 14 274 ZF-HD Transcription Factor Family AT5G15210 51.3 1.1e-48 190.7
Hepe07g1387 . 80 295 ZF-HD Transcription Factor Family AT1G14440 53.0 3.4e-54 209.1
Hepe02g1975 . 1 249 ZF-HD Transcription Factor Family AT3G28920 60.6 2.8e-61 232.6
Hepe02g2004 . 1 249 ZF-HD Transcription Factor Family AT3G28920 60.6 2.8e-61 232.6
Hepe02g3167 . 25 276 ZF-HD Transcription Factor Family AT3G28920 59.1 3.6e-56 215.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000801 3 3 3 2 2 3 5 3 3 2 2 3 5 2 2 3 3 5 5 3 2 2 3 3 3 3 3 4 3 2 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55916 PF04770 ZF-HD_dimer 4.30E-29 No_clan Hepe TF