Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe07g0601 ATGGAGTTCGAAGATCACGAGGAAGAAGATGAAATGGAAATAGAAACAACAACAAACTGCAACAACCACAACAGCAACAACAACAACAAACCACTTTCCCGACTCAACAAAAACCCGTCTCCGGTCCACACGAACCGCCCTCACCCGCTCTCCACCAAGCCCCCCTACAACTACAAAGAGTGCTTAAAAAACCACGCCGTCGCAGTCGGCGGGCATGCCCTCGACGGTTGCGGCGAGTTCATGCCCGCCGGACCCGACGGCTCTCTCGATGCCCTCAAATGCGCCGCCTGCAACTGCCACCGCAACTTCCACCGCAAGGACATTATTACTATCCCGAACGGCAACCGGGACCAATCACCGTTTGTGTCGTGTTGGCATGCCCCGACCGGGTACCTTCACGTGGCGCCGCAGCGGCAGATGCTGGCACTGCCGTCGCCTGCTGGAGACGACGGCAGTGGCAGCAGGAAGCGGCTGCGGACGAAGTTCACGGAGGAGCAGAAGGAAAAGATGGTGGTGATGGCGGAGAAACTGGATTGGAGGATTCAGAAGAGCGATGAAGCGGCGGTGATGGAATTTTGCAGTGAAATCGGGGTGAAGAGACGAGTGTTGAAGGTTTGGATGCATAACAACAAGAACACGTTTCGTAAGGAATCTCAAGAAATTAAATTTTCGTAA 675 54.37 MEFEDHEEEDEMEIETTTNCNNHNSNNNNKPLSRLNKNPSPVHTNRPHPLSTKPPYNYKECLKNHAVAVGGHALDGCGEFMPAGPDGSLDALKCAACNCHRNFHRKDIITIPNGNRDQSPFVSCWHAPTGYLHVAPQRQMLALPSPAGDDGSGSRKRLRTKFTEEQKEKMVVMAEKLDWRIQKSDEAAVMEFCSEIGVKRRVLKVWMHNNKNTFRKESQEIKFS 224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6600010 6600921 + Hsped.07g06010.1 Hepe07g0601 573996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe07g0601 224 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 24 213 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Hepe07g0601 224 MobiDBLite consensus disorder prediction 1 15 - -
Hepe07g0601 224 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 57 107 IPR006456 -
Hepe07g0601 224 NCBIfam homeobox domain, ZF-HD class 155 212 IPR006455 -
Hepe07g0601 224 SUPERFAMILY Homeodomain-like 147 216 IPR009057 -
Hepe07g0601 224 Pfam ZF-HD protein dimerisation region 57 108 IPR006456 -
Hepe07g0601 224 MobiDBLite consensus disorder prediction 17 51 - -
Hepe07g0601 224 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 58 107 IPR006456 -
Hepe07g0601 224 FunFam Zinc-finger homeodomain protein 2 145 216 - -
Hepe07g0601 224 Gene3D - 145 216 - -
Hepe07g0601 224 MobiDBLite consensus disorder prediction 1 56 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe07g0601 Hepe-Chr7:6600010 Hepe10g0451 Hepe-Chr10:5146378 3.32e-54 dispersed
Hepe07g2329 Hepe-Chr7:67622894 Hepe07g0601 Hepe-Chr7:6600010 1.99e-37 transposed
Hepe04g1409 Hepe-Chr4:69733318 Hepe07g0601 Hepe-Chr7:6600010 7.80e-57 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55916 PF04770 ZF-HD_dimer 4.30E-29 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe07g0601 - - - 0.0