Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe07g0624 ATGAAAATGATGTTAGTTAGGATGGGAGAACTCTATCTTACAATTCTAATACTGGCTTGCTTTCATTATCCTGCGCAGTCTGATTTTCAAGGTGATGCACTCTTTGCATTGAAGAACGCATTGAATGCAACAGCAAATCAGCTCACAGATTGGAACCCAAATCAAGTCAATCCATGTACTTGGACCAGTGTTATATGTAGTGGAAACAATGTGATCTCTATATCCTTGTCAACAATGGGATTTACTGGAACCTTGTCTCCGAGAATTGGAGTTCTAAAATCACTTTCAACTTTGATTTTGCAGGGAAATCACATAACTGGAGAGATACCAAAGGATTTTGGCAACCTGACAAATTTGGTCAGTTTGGATTTGGGAAATAACAGCCTCACTGGCCAAATACCATCGTCCCTGGGTAATCTTAAGAAACTACAGTTCTTAACTCTGAGTCAAAATCGTCTATCTGGGACTATTCCTGAGTCACTCTCAAGCCTTCCTAGCTTGATAAATCTTCTGCTTGATTCAAATGATCTCAGTGGCCCAATTCCGGAGCAGTTATTTCAATTTCCAAAATTCAACTTTTCTGGAAACAAGTTAAATTGTGGCGGGAAGTCTCTTCCTGCATGTGCTTCAGACAGTACAAACTCAGGCTCTTCAAATAAACCTAAGGTTGGCCTTATAGTTGGAATTATTGCTGGGTTTACTGTTGCTCTTCTCTTGCTCGGTGTATTATTTTTCTTGTGCAAGGGTAAATATAAAGACTACAAGCGCGAAGTGTTTGTAGATGTTGCAGGTGAAGTTGATCGAAGAATTGCATTTGGTCAGCTGAAAAGATTTGCATGGAGGGAACTACAGATAGCTACAGAAAACTTTAGTGAGAAAAATGTTTTAGGACAAGGAGGCTTTGGAAAGGTGTACAAAGGGGTGCTTGCCGATGGCACCAAAGTTGCAGTGAAACGGTTGACTGATTATGAAAGTCCAGGGGGAGATGCTGCTTTTCAGCGTGAAGTTGAGATGATTAGTGTAGCTGTTCATAGGAATCTGTTGCGGCTTATTGGGTTCTGTACAACTCAAACAGAACGCCTTTTGGTGTATCCCTTTATGCAGAATTTGAGTGTTGCCTACCGTCTTCGAGAACTTAAGCCCGGGGAAGCTGTTTTAGGTTGGCCTACTCGAAAATGCGTGGCATTGGGCACAGCTCGTGGTTTAGAGTATCTTCATGAACATTGCAATCCGAAGATTATTCATCGAGATGTTAAGGCGGCTAATGTATTGCTTGATGAGGATTTTGAAGCAGTTGTTGGCGATTTTGGCTTAGCAAAGTTGGTTGATGTTAGGAAGACTAATGTCACTACTCAAGTTCGAGGGACAATGGGCCACATAGCACCAGAGTACTTATCAACTGGAAAATCATCAGAAAGGACTGATGTTTTTGGTTATGGTATCATGCTTTTAGAACTTGTTACAGGGCAACGTGCAATCGACTTCTCACGCTTAGAAGAAGAAGACGATGTTTTACTGCTCGACCATGTTAAGAAACTAGAAAGGGAGAAACGACTCAATGATATTGTAGATCGAAATCTAACTAACTACAACATTCAAGAGGTGGAGATGATGATTCAAGTTGCATTGCTGTGCACACAGCCATGTTCGGATGACCGTCCAGCGATGTCACAAGTCGTTCGGATGCTCGAAGGAGAGGGATTGGCAGAGAGGTGGGAAGAATGGCAACATTTGGAGGTGACTCGCAGACAAGAGTATGAGAGACTGCAGAGAAGATTTGAATGGGGGGAAGATTCTATTCATAGACAGGATGCAATACAATTATCCGGTGGAAGATGA 1839 41.87 MKMMLVRMGELYLTILILACFHYPAQSDFQGDALFALKNALNATANQLTDWNPNQVNPCTWTSVICSGNNVISISLSTMGFTGTLSPRIGVLKSLSTLILQGNHITGEIPKDFGNLTNLVSLDLGNNSLTGQIPSSLGNLKKLQFLTLSQNRLSGTIPESLSSLPSLINLLLDSNDLSGPIPEQLFQFPKFNFSGNKLNCGGKSLPACASDSTNSGSSNKPKVGLIVGIIAGFTVALLLLGVLFFLCKGKYKDYKREVFVDVAGEVDRRIAFGQLKRFAWRELQIATENFSEKNVLGQGGFGKVYKGVLADGTKVAVKRLTDYESPGGDAAFQREVEMISVAVHRNLLRLIGFCTTQTERLLVYPFMQNLSVAYRLRELKPGEAVLGWPTRKCVALGTARGLEYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVDVRKTNVTTQVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAIDFSRLEEEDDVLLLDHVKKLEREKRLNDIVDRNLTNYNIQEVEMMIQVALLCTQPCSDDRPAMSQVVRMLEGEGLAERWEEWQHLEVTRRQEYERLQRRFEWGEDSIHRQDAIQLSGGR 612
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6876850 6884922 + Hsped.07g06240.1 Hepe07g0624 574019
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe07g0624 612 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 14 610 - -
Hepe07g0624 612 SUPERFAMILY L domain-like 30 200 - -
Hepe07g0624 612 Pfam Leucine rich repeat 94 153 IPR001611 GO:0005515(InterPro)
Hepe07g0624 612 Pfam Leucine rich repeat N-terminal domain 29 67 IPR013210 -
Hepe07g0624 612 ProSiteProfiles Protein kinase domain profile. 290 568 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe07g0624 612 ProSitePatterns Serine/Threonine protein kinases active-site signature. 413 425 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe07g0624 612 SMART LRR_typ_2 92 115 IPR003591 -
Hepe07g0624 612 SMART LRR_typ_2 116 140 IPR003591 -
Hepe07g0624 612 SMART LRR_typ_2 164 188 IPR003591 -
Hepe07g0624 612 Pfam Protein tyrosine and serine/threonine kinase 293 563 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe07g0624 612 Gene3D Ribonuclease Inhibitor 28 209 IPR032675 -
Hepe07g0624 612 Gene3D Phosphorylase Kinase; domain 1 259 366 - -
Hepe07g0624 612 SUPERFAMILY Protein kinase-like (PK-like) 270 564 IPR011009 -
Hepe07g0624 612 ProSitePatterns Protein kinases ATP-binding region signature. 296 318 IPR017441 GO:0005524(InterPro)
Hepe07g0624 612 FunFam Putative LRR receptor-like serine/threonine-protein kinase 27 210 - -
Hepe07g0624 612 SMART serkin_6 290 563 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe07g0624 612 Gene3D Transferase(Phosphotransferase) domain 1 367 583 - -
Hepe07g0624 612 FunFam Somatic embryogenesis receptor kinase 1 259 366 - -
Hepe07g0624 612 FunFam Somatic embryogenesis receptor-like kinase 1 367 583 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe07g0624 Hepe-Chr7:6876850 Hepe08g1197 Hepe-Chr8:12341898 4.10e-196 dispersed
Hepe07g0624 Hepe-Chr7:6876850 Hepe07g0626 Hepe-Chr7:6891389 1.48e-28 proximal
Hepe07g0624 Hepe-Chr7:6876850 Hepe07g0627 Hepe-Chr7:6917442 1.56e-138 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72924 PF00069 Pkinase 9.30E-42 CL0016 Hepe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe07g0624 - - - 0.0