Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe07g0652 ATGGGGCGAGTTAAGTTGCAGATCAAGAGGATAGAAAACAACACCAATCGCCAAGTCACTTTCTCCAAACGCAGAAATGGACTCATCAAAAAAGCTTATGAACTTTCAATTTTATGCGACATCGATATCGCTCTTATTATGTTCTCTCCTTCCGGCCGCCTCAGCCACTTCTCCGGCCGCCGCAGAATTGAGGATGTGCTTGCTCGTTACATAAATTTGCCTGACCATGATAGAGGAAGCGTTGTTCAGAATAAAGAGTTTTTACTTGGGACATTAAATAATCTGAAGACAGAGAATGATATTGCCCTTCAACTTGCCAATCCTACATCAAGCAACTCCAATGTTGAGGAGCTTCAACAAGAGATTGGTACATTGAGACATGAGCTTCAACTTGGGGAGCAGCAGCTCAGGTTATTCGAACCTGATCCTCTCTCATTCACATCAAATGGTGAAATCGAGTCTTGTGAGAAGAACCTTCTGGAAACTTTGGCGAGGATCACCCAAAAGAAAAAAGATTTATTAAGTAGTCACTTATCTCCTTACGATCCTCCAAATACTCTTCAGATATATTTGGAATCACAAGAGGGAATACCAACCTCGTTTGAAAACGATGTTGCTAATTGGTCGTTGACCGAAAATAGCCAGAACCCGACTCAAATTTGTGTTGCATCTGAGTCATCTTCGATCCCTCAAAGTAGTCAATATCCAACAACAATTTACGATCAAGTATCGCAAGCAACAAACATGAACGGGTCATGCAACATTGGTGGTTGCGACATCGGCAATCCGAACGATGATAACTATTCTTCTTGGCATCACAACTACACCACATCTCAACTCCTCTCTTCTTTCATCCCGCAATCCTCATTTGATAATATGAAGCATGAAATTGGAGGGCCTTGTATGAATACAATGATGTCGCACTCGCAGCAACAAGTTGATACGATTTCAAATGGGAACCAACAAATGCCTCCTAGTGACGGAAGTACTAATTATGATAACGCCAAGTTGCCTCAACTCAACGATTAA 1029 41.79 MGRVKLQIKRIENNTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRLSHFSGRRRIEDVLARYINLPDHDRGSVVQNKEFLLGTLNNLKTENDIALQLANPTSSNSNVEELQQEIGTLRHELQLGEQQLRLFEPDPLSFTSNGEIESCEKNLLETLARITQKKKDLLSSHLSPYDPPNTLQIYLESQEGIPTSFENDVANWSLTENSQNPTQICVASESSSIPQSSQYPTTIYDQVSQATNMNGSCNIGGCDIGNPNDDNYSSWHHNYTTSQLLSSFIPQSSFDNMKHEIGGPCMNTMMSHSQQQVDTISNGNQQMPPSDGSTNYDNAKLPQLND 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 7466567 7470540 - Hsped.07g06520.1 Hepe07g0652 574047
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe07g0652 342 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 248 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Hepe07g0652 342 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe07g0652 342 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe07g0652 342 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe07g0652 342 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe07g0652 342 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe07g0652 342 Gene3D - 13 90 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe07g0652 342 MobiDBLite consensus disorder prediction 308 342 - -
Hepe07g0652 342 Coils Coil 115 135 - -
Hepe07g0652 342 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe07g0652 342 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe07g0652 342 SUPERFAMILY SRF-like 2 81 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe07g0652 342 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Hepe07g0652 342 FunFam MADS-box transcription factor 41 13 91 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe07g0652 Hepe-Chr7:7466567 Hepe07g2502 Hepe-Chr7:69351187 3.00e-22 dispersed
Hepe07g0652 Hepe-Chr7:7466567 Hepe10g1754 Hepe-Chr10:54333540 9.15e-27 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55919 PF00319 SRF-TF 1.10E-25 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe07g0652 - - - 0.0