Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Hepe07g0652 | ATGGGGCGAGTTAAGTTGCAGATCAAGAGGATAGAAAACAACACCAATCGCCAAGTCACTTTCTCCAAACGCAGAAATGGACTCATCAAAAAAGCTTATGAACTTTCAATTTTATGCGACATCGATATCGCTCTTATTATGTTCTCTCCTTCCGGCCGCCTCAGCCACTTCTCCGGCCGCCGCAGAATTGAGGATGTGCTTGCTCGTTACATAAATTTGCCTGACCATGATAGAGGAAGCGTTGTTCAGAATAAAGAGTTTTTACTTGGGACATTAAATAATCTGAAGACAGAGAATGATATTGCCCTTCAACTTGCCAATCCTACATCAAGCAACTCCAATGTTGAGGAGCTTCAACAAGAGATTGGTACATTGAGACATGAGCTTCAACTTGGGGAGCAGCAGCTCAGGTTATTCGAACCTGATCCTCTCTCATTCACATCAAATGGTGAAATCGAGTCTTGTGAGAAGAACCTTCTGGAAACTTTGGCGAGGATCACCCAAAAGAAAAAAGATTTATTAAGTAGTCACTTATCTCCTTACGATCCTCCAAATACTCTTCAGATATATTTGGAATCACAAGAGGGAATACCAACCTCGTTTGAAAACGATGTTGCTAATTGGTCGTTGACCGAAAATAGCCAGAACCCGACTCAAATTTGTGTTGCATCTGAGTCATCTTCGATCCCTCAAAGTAGTCAATATCCAACAACAATTTACGATCAAGTATCGCAAGCAACAAACATGAACGGGTCATGCAACATTGGTGGTTGCGACATCGGCAATCCGAACGATGATAACTATTCTTCTTGGCATCACAACTACACCACATCTCAACTCCTCTCTTCTTTCATCCCGCAATCCTCATTTGATAATATGAAGCATGAAATTGGAGGGCCTTGTATGAATACAATGATGTCGCACTCGCAGCAACAAGTTGATACGATTTCAAATGGGAACCAACAAATGCCTCCTAGTGACGGAAGTACTAATTATGATAACGCCAAGTTGCCTCAACTCAACGATTAA | 1029 | 41.79 | MGRVKLQIKRIENNTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRLSHFSGRRRIEDVLARYINLPDHDRGSVVQNKEFLLGTLNNLKTENDIALQLANPTSSNSNVEELQQEIGTLRHELQLGEQQLRLFEPDPLSFTSNGEIESCEKNLLETLARITQKKKDLLSSHLSPYDPPNTLQIYLESQEGIPTSFENDVANWSLTENSQNPTQICVASESSSIPQSSQYPTTIYDQVSQATNMNGSCNIGGCDIGNPNDDNYSSWHHNYTTSQLLSSFIPQSSFDNMKHEIGGPCMNTMMSHSQQQVDTISNGNQQMPPSDGSTNYDNAKLPQLND | 342 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 7466567 | 7470540 | - | Hsped.07g06520.1 | Hepe07g0652 | 574047 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Hepe07g0652 | 342 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 248 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Hepe07g0652 | 342 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Hepe07g0652 | 342 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Hepe07g0652 | 342 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Hepe07g0652 | 342 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Hepe07g0652 | 342 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Hepe07g0652 | 342 | Gene3D | - | 13 | 90 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Hepe07g0652 | 342 | MobiDBLite | consensus disorder prediction | 308 | 342 | - | - | |
Hepe07g0652 | 342 | Coils | Coil | 115 | 135 | - | - | |
Hepe07g0652 | 342 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Hepe07g0652 | 342 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Hepe07g0652 | 342 | SUPERFAMILY | SRF-like | 2 | 81 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Hepe07g0652 | 342 | CDD | MADS_MEF2_like | 2 | 75 | IPR033896 | GO:0000977(InterPro)|GO:0045944(InterPro) | |
Hepe07g0652 | 342 | FunFam | MADS-box transcription factor 41 | 13 | 91 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Hepe07g0652 | Hepe-Chr7:7466567 | Hepe07g2502 | Hepe-Chr7:69351187 | 3.00e-22 | dispersed | |
Hepe07g0652 | Hepe-Chr7:7466567 | Hepe10g1754 | Hepe-Chr10:54333540 | 9.15e-27 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
55919 | PF00319 | SRF-TF | 1.10E-25 | No_clan | Hepe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Hepe07g0652 | - | - | - | 0.0 |