Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe07g0652 ATGGGGCGAGTTAAGTTGCAGATCAAGAGGATAGAAAACAACACCAATCGCCAAGTCACTTTCTCCAAACGCAGAAATGGACTCATCAAAAAAGCTTATGAACTTTCAATTTTATGCGACATCGATATCGCTCTTATTATGTTCTCTCCTTCCGGCCGCCTCAGCCACTTCTCCGGCCGCCGCAGAATTGAGGATGTGCTTGCTCGTTACATAAATTTGCCTGACCATGATAGAGGAAGCGTTGTTCAGAATAAAGAGTTTTTACTTGGGACATTAAATAATCTGAAGACAGAGAATGATATTGCCCTTCAACTTGCCAATCCTACATCAAGCAACTCCAATGTTGAGGAGCTTCAACAAGAGATTGGTACATTGAGACATGAGCTTCAACTTGGGGAGCAGCAGCTCAGGTTATTCGAACCTGATCCTCTCTCATTCACATCAAATGGTGAAATCGAGTCTTGTGAGAAGAACCTTCTGGAAACTTTGGCGAGGATCACCCAAAAGAAAAAAGATTTATTAAGTAGTCACTTATCTCCTTACGATCCTCCAAATACTCTTCAGATATATTTGGAATCACAAGAGGGAATACCAACCTCGTTTGAAAACGATGTTGCTAATTGGTCGTTGACCGAAAATAGCCAGAACCCGACTCAAATTTGTGTTGCATCTGAGTCATCTTCGATCCCTCAAAGTAGTCAATATCCAACAACAATTTACGATCAAGTATCGCAAGCAACAAACATGAACGGGTCATGCAACATTGGTGGTTGCGACATCGGCAATCCGAACGATGATAACTATTCTTCTTGGCATCACAACTACACCACATCTCAACTCCTCTCTTCTTTCATCCCGCAATCCTCATTTGATAATATGAAGCATGAAATTGGAGGGCCTTGTATGAATACAATGATGTCGCACTCGCAGCAACAAGTTGATACGATTTCAAATGGGAACCAACAAATGCCTCCTAGTGACGGAAGTACTAATTATGATAACGCCAAGTTGCCTCAACTCAACGATTAA 1029 41.79 MGRVKLQIKRIENNTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRLSHFSGRRRIEDVLARYINLPDHDRGSVVQNKEFLLGTLNNLKTENDIALQLANPTSSNSNVEELQQEIGTLRHELQLGEQQLRLFEPDPLSFTSNGEIESCEKNLLETLARITQKKKDLLSSHLSPYDPPNTLQIYLESQEGIPTSFENDVANWSLTENSQNPTQICVASESSSIPQSSQYPTTIYDQVSQATNMNGSCNIGGCDIGNPNDDNYSSWHHNYTTSQLLSSFIPQSSFDNMKHEIGGPCMNTMMSHSQQQVDTISNGNQQMPPSDGSTNYDNAKLPQLND 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 7466567 7470540 - Hsped.07g06520.1 Hepe07g0652 574047

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe07g0652 342 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 248 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Hepe07g0652 342 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe07g0652 342 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe07g0652 342 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe07g0652 342 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe07g0652 342 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe07g0652 342 Gene3D - 13 90 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe07g0652 342 MobiDBLite consensus disorder prediction 308 342 - -
Hepe07g0652 342 Coils Coil 115 135 - -
Hepe07g0652 342 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe07g0652 342 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe07g0652 342 SUPERFAMILY SRF-like 2 81 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe07g0652 342 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Hepe07g0652 342 FunFam MADS-box transcription factor 41 13 91 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe07g0652 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe07g0652 Hepe-Chr7:7466567 Hepe07g2502 Hepe-Chr7:69351187 3.00e-22 dispersed
Hepe07g0652 Hepe-Chr7:7466567 Hepe10g1754 Hepe-Chr10:54333540 9.15e-27 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe10g1754 . 1 340 Type I MADS-box Gene Family AT2G03060 51.0 6.9e-94 341.3
Hepe07g2502 . 1 257 Type I MADS-box Gene Family AT2G03060 53.2 1.5e-67 253.8
Hepe07g0389 . 4 159 Type I MADS-box Gene Family AT2G24840 54.1 6.4e-38 154.8
Hepe07g0389 . 1 176 Type I MADS-box Gene Family AT5G60440 59.2 1.3e-50 197.2
Hepe07g0652 . 1 174 Type I MADS-box Gene Family AT1G77950 59.9 3.9e-53 205.3
Hepe09g1768 . 1 156 Type I MADS-box Gene Family AT5G48670 64.7 3.6e-51 199.1
Hepe07g1493 . 1 157 Type I MADS-box Gene Family AT5G48670 59.2 4.4e-49 192.2
Hepe10g1754 . 1 340 Type I MADS-box Gene Family AT2G03060 51.0 6.9e-94 341.3
Hepe07g2502 . 1 257 Type I MADS-box Gene Family AT2G03060 53.2 1.5e-67 253.8
Hepe07g0389 . 4 159 Type I MADS-box Gene Family AT2G24840 54.1 6.4e-38 154.8
Hepe07g0389 . 1 176 Type I MADS-box Gene Family AT5G60440 59.2 1.3e-50 197.2
Hepe07g0652 . 1 174 Type I MADS-box Gene Family AT1G77950 59.9 3.9e-53 205.3
Hepe09g1768 . 1 156 Type I MADS-box Gene Family AT5G48670 64.7 3.6e-51 199.1
Hepe07g1493 . 1 157 Type I MADS-box Gene Family AT5G48670 59.2 4.4e-49 192.2
Hepe10g1754 . 1 340 Type I MADS-box Gene Family AT2G03060 51.0 6.9e-94 341.3
Hepe07g2502 . 1 257 Type I MADS-box Gene Family AT2G03060 53.2 1.5e-67 253.8
Hepe07g0389 . 1 176 Type I MADS-box Gene Family AT5G60440 59.2 1.3e-50 197.2
Hepe09g1768 . 1 156 Type I MADS-box Gene Family AT5G48670 64.7 3.6e-51 199.1
Hepe07g1493 . 1 157 Type I MADS-box Gene Family AT5G48670 59.2 4.4e-49 192.2
Hepe07g0389 . 4 159 Type I MADS-box Gene Family AT2G24840 54.1 6.4e-38 154.8
Hepe07g0652 . 1 174 Type I MADS-box Gene Family AT1G77950 59.9 3.9e-53 205.3
Hepe10g1754 . 1 340 Type I MADS-box Gene Family AT2G03060 51.0 6.9e-94 341.3
Hepe07g2502 . 1 257 Type I MADS-box Gene Family AT2G03060 53.2 1.5e-67 253.8
Hepe07g0389 . 1 176 Type I MADS-box Gene Family AT5G60440 59.2 1.3e-50 197.2
Hepe09g1768 . 1 156 Type I MADS-box Gene Family AT5G48670 64.7 3.6e-51 199.1
Hepe07g1493 . 1 157 Type I MADS-box Gene Family AT5G48670 59.2 4.4e-49 192.2
Hepe07g0389 . 4 159 Type I MADS-box Gene Family AT2G24840 54.1 6.4e-38 154.8
Hepe07g0652 . 1 174 Type I MADS-box Gene Family AT1G77950 59.9 3.9e-53 205.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008266 1 1 2 1 1 1 1 1 1 1 1 1 1 2 2 1 1 3 1 1 1 1 1 1 1 0 1 1 1 2 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55919 PF00319 SRF-TF 1.10E-25 No_clan Hepe TF