Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe07g0682 ATGCCCACAGACTTGGAAAATTCCTCCACCGCTTCCGGCGAAGCCAGTATCTCCTCCTCCTGCAATCAGCCTCCGCCGCCCAAATCCGCCGTAAAAAGGAAGCGTAATTTACCCGGAATGCCAGATCCAGAAGCAGAGGTAATTGCTCTGTCTCCGAAGACCCTTTTGGCGACAAATCGATTCGTTTGTGAAATTTGCAACAAAGGGTTTCAAAGAGATCAGAATCTGCAACTTCACCGGCGAGGTCACAATCTTCCATGGAAACTCCGGCAACGGACGAGCAAAGAGGTGAAAAAGAAAGTCTATGTCTGCCCGGAGCCGTCGTGCGTCCACCACCATCCGTCGAGAGCTCTCGGCGATCTCACTGGAATAAAGAAGCACTTCTGCCGTAAGCACGGCGAGAAGAAGTGGAAGTGCGACAAGTGCTCTAAAAAATACGCCGTGAAGTCCGATTGGAAGGCCCATTCTAAGATTTGTGGCACAAAAGAGTACAAATGTGACTGTGAGACTGTATTTTCGAGAAGAGATAGCTTCATCACTCACAGAGCCTTCTGTGATGTGTTGACGAAGGAGGCCGCCGGAAGTCTGTCTCCGGCGGCGGAGAATCCTAATTTGGAGTCCGATCCCCAACCTCCGCCGCGGGGTAGCTCATCTCCATCGCCTACTGCTCCTCCTTCTTCCGCCGCCGCCACCCCTCCTCCATCAACTGACGCTATATCATCAATCTCGTGCATTCAGAATAAAGCAATGGAGTTTCCGGAAAGCCCTCTGTCGCCGCTAGGAGAGGCACCGGGCAAAATTGCCCTAGCTGGAAGCTCCGGCAGCAGCAACACCACCATCGGCAGCAGCAACACTACCATATTGGCTAGTTTGTTTGCTTCCTCCGCTGCATCACTGAGCTTACAGCCCCCGCAACCGCCGGCGTTTTGCGACTTATTACGTGCCATGGCGCGGCCCGATCAGGCGACTGAAATTGCACCACCGCTGGTTTTCGAACCTCTTTCTCTATGCCTATCGACCCACACCGGATCGTCACTTTTTGGATCGGGAATCCAAGAGCGCCGCCCATATGCACCGCCGCAACCGCCGGCCATGTCCGCCACTGGGCTCCTGCAGAAGGCCGCTCAAATGGGCGTTGCGGCAGCGAGCACATCGGTGTTTCGTGGACTTGGTTTATCAACTTCCTCTTCTTCTACACAGCAGGGGAGTTTATAA 1215 53.91 MPTDLENSSTASGEASISSSCNQPPPPKSAVKRKRNLPGMPDPEAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSKEVKKKVYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVKSDWKAHSKICGTKEYKCDCETVFSRRDSFITHRAFCDVLTKEAAGSLSPAAENPNLESDPQPPPRGSSSPSPTAPPSSAAATPPPSTDAISSISCIQNKAMEFPESPLSPLGEAPGKIALAGSSGSSNTTIGSSNTTILASLFASSAASLSLQPPQPPAFCDLLRAMARPDQATEIAPPLVFEPLSLCLSTHTGSSLFGSGIQERRPYAPPQPPAMSATGLLQKAAQMGVAAASTSVFRGLGLSTSSSSTQQGSL 404
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 7966054 7970492 + Hsped.07g06820.1 Hepe07g0682 574077
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe07g0682 404 MobiDBLite consensus disorder prediction 1 26 - -
Hepe07g0682 404 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Hepe07g0682 404 Gene3D Classic Zinc Finger 41 108 - -
Hepe07g0682 404 FunFam protein indeterminate-domain 5, chloroplastic-like 115 194 - -
Hepe07g0682 404 MobiDBLite consensus disorder prediction 1 43 - -
Hepe07g0682 404 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 19 393 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Hepe07g0682 404 MobiDBLite consensus disorder prediction 205 231 - -
Hepe07g0682 404 FunFam protein indeterminate-domain 12-like 40 108 - -
Hepe07g0682 404 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 83 IPR013087 -
Hepe07g0682 404 SMART c2h2final6 61 83 IPR013087 -
Hepe07g0682 404 SMART c2h2final6 137 157 IPR013087 -
Hepe07g0682 404 MobiDBLite consensus disorder prediction 196 238 - -
Hepe07g0682 404 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 136 160 - -
Hepe07g0682 404 Pfam Zinc finger, C2H2 type 61 83 IPR013087 -
Hepe07g0682 404 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 163 198 - -
Hepe07g0682 404 Gene3D Classic Zinc Finger 115 193 - -
Hepe07g0682 404 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 98 132 - -
Hepe07g0682 404 SUPERFAMILY beta-beta-alpha zinc fingers 60 157 IPR036236 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g1495 Hepe-Chr4:70566490 Hepe07g0682 Hepe-Chr7:7966054 7.82e-158 dispersed
Hepe07g0682 Hepe-Chr7:7966054 Hepe10g0659 Hepe-Chr10:8737679 2.60e-105 dispersed
Hepe04g1493 Hepe-Chr4:70556596 Hepe07g0682 Hepe-Chr7:7966054 8.50e-152 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55926 PF00096 zf-C2H2 0.0039 CL0361 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe07g0682 K25869 - csv:101215476 569.311