Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe07g0688 ATGGAATGTCTTGACGCCGCTCTCAAACCCTGTTTCCGCAACGATATCTCTCTCCAACCACAGCTTTCTGTTCATGATAATGCCTCTGATGACTTTTTCGTCGACCAACTCCTTGATTTGTCTAACCACGACGAATTTGTTCAACCGGATCATTTCCCCGACCACGATAACCCTTCTCTTTCTCTTTCTGTTTCCGGTCACCAATTTCATCACACCTCCTTCGTTTCTGATCTTCCTTCTTTGCCTTCCACCGAACTTACCGTTCCGGCAGAGGATTTGGCAGACCTCGAATGGCTGTCCCATTTCGTTGAGGATTCTTTCTCTGGATTCTCCGCTTCGTTTCCCTCTGCCGCCGCCGTGGACCACCAACCGGAGAACGGTGGTTCTCTCTCGCCGCTGAAGCCCTGTTTCAAAACCCCCGTTCCGGTGAAGGCTCGAAGCAAGAGGACCAGAACCGGCGGCAGAGTTTGGTGCCTCGCTTCATCGTCGTTGACCGAGTCATCCTCCAGTTCAACGACGTCGTCCTCCTCCTCGTCCCCCACGAGTCCTTGGTTCTTCATCTCCGAACGCTTCGAACCGGAAGTTCCGGTCTCGAAGAAACGGAGGAGAAAGTCGCCGGCGGAAAAGTTCAGAGTCGCCTTCGGAGCACAGGCGCCGCGCCGGTGTAGCCATTGCGGAGTCCAGAAAACCCCTCAGTGGAGAACCGGCCCCCTCGGAGCAAAAACTCTCTGCAACGCTTGTGGCGTTAGGTTCAAATCGGGTCGGCTTTTACCCGAATACCGACCCGCCTGCAGCCCGACTTTCTCCAGCGAATTGCACTCCAACCACCACCGGAAAGTCCTGGAGATGCGCCGGACCAAGGAAACCGCCGCACCGGCCGAGTTTTTGACATCAGAAAACAAATAG 906 54.75 MECLDAALKPCFRNDISLQPQLSVHDNASDDFFVDQLLDLSNHDEFVQPDHFPDHDNPSLSLSVSGHQFHHTSFVSDLPSLPSTELTVPAEDLADLEWLSHFVEDSFSGFSASFPSAAAVDHQPENGGSLSPLKPCFKTPVPVKARSKRTRTGGRVWCLASSSLTESSSSSTTSSSSSSPTSPWFFISERFEPEVPVSKKRRRKSPAEKFRVAFGAQAPRRCSHCGVQKTPQWRTGPLGAKTLCNACGVRFKSGRLLPEYRPACSPTFSSELHSNHHRKVLEMRRTKETAAPAEFLTSENK 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 8121845 8122842 - Hsped.07g06880.1 Hepe07g0688 574083

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe07g0688 301 CDD ZnF_GATA 221 269 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe07g0688 301 ProSitePatterns GATA-type zinc finger domain. 222 247 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe07g0688 301 Pfam GATA zinc finger 222 256 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe07g0688 301 Gene3D - 215 289 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Hepe07g0688 301 FunFam GATA transcription factor 213 297 - -
Hepe07g0688 301 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 215 278 - -
Hepe07g0688 301 PANTHER GATA TRANSCRIPTION FACTOR 31 288 IPR051140 GO:0005634(PANTHER)|GO:0030154(PANTHER)
Hepe07g0688 301 SMART GATA_3 216 270 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe07g0688 301 ProSiteProfiles GATA-type zinc finger domain profile. 216 252 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe07g0688 301 PIRSF Txn_fac_GATA_plant 15 301 IPR016679 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0045893(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe07g0688 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe07g0688 Hepe-Chr7:8121845 Hepe08g0974 Hepe-Chr8:9152296 5.29e-56 dispersed
Hepe04g1516 Hepe-Chr4:70712151 Hepe07g0688 Hepe-Chr7:8121845 1.72e-08 wgd
Hepe04g1570 Hepe-Chr4:71201897 Hepe07g0688 Hepe-Chr7:8121845 5.35e-52 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe10g0381 . 83 366 C2C2-Gata Transcription Factor Family AT5G25830 53.5 3.3e-68 255.8
Hepe01g2218 . 98 332 C2C2-Gata Transcription Factor Family AT5G25830 54.8 1.2e-62 237.3
Hepe01g2218 . 98 292 C2C2-Gata Transcription Factor Family AT3G60530 51.8 2.1e-43 172.9
Hepe07g0688 . 30 294 C2C2-Gata Transcription Factor Family AT3G51080 51.8 8.3e-53 204.5
Hepe04g1570 . 99 263 C2C2-Gata Transcription Factor Family AT4G36240 52.6 1.8e-39 159.8
Hepe06g1713 . 1 517 C2C2-Gata Transcription Factor Family AT4G17570 52.1 1.3e-135 480.3
Hepe06g1094 . 1 520 C2C2-Gata Transcription Factor Family AT4G17570 53.0 8.4e-135 477.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008902 3 0 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 2 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55929 PF00320 GATA 3.70E-16 CL0167 Hepe TF