Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe07g0688 ATGGAATGTCTTGACGCCGCTCTCAAACCCTGTTTCCGCAACGATATCTCTCTCCAACCACAGCTTTCTGTTCATGATAATGCCTCTGATGACTTTTTCGTCGACCAACTCCTTGATTTGTCTAACCACGACGAATTTGTTCAACCGGATCATTTCCCCGACCACGATAACCCTTCTCTTTCTCTTTCTGTTTCCGGTCACCAATTTCATCACACCTCCTTCGTTTCTGATCTTCCTTCTTTGCCTTCCACCGAACTTACCGTTCCGGCAGAGGATTTGGCAGACCTCGAATGGCTGTCCCATTTCGTTGAGGATTCTTTCTCTGGATTCTCCGCTTCGTTTCCCTCTGCCGCCGCCGTGGACCACCAACCGGAGAACGGTGGTTCTCTCTCGCCGCTGAAGCCCTGTTTCAAAACCCCCGTTCCGGTGAAGGCTCGAAGCAAGAGGACCAGAACCGGCGGCAGAGTTTGGTGCCTCGCTTCATCGTCGTTGACCGAGTCATCCTCCAGTTCAACGACGTCGTCCTCCTCCTCGTCCCCCACGAGTCCTTGGTTCTTCATCTCCGAACGCTTCGAACCGGAAGTTCCGGTCTCGAAGAAACGGAGGAGAAAGTCGCCGGCGGAAAAGTTCAGAGTCGCCTTCGGAGCACAGGCGCCGCGCCGGTGTAGCCATTGCGGAGTCCAGAAAACCCCTCAGTGGAGAACCGGCCCCCTCGGAGCAAAAACTCTCTGCAACGCTTGTGGCGTTAGGTTCAAATCGGGTCGGCTTTTACCCGAATACCGACCCGCCTGCAGCCCGACTTTCTCCAGCGAATTGCACTCCAACCACCACCGGAAAGTCCTGGAGATGCGCCGGACCAAGGAAACCGCCGCACCGGCCGAGTTTTTGACATCAGAAAACAAATAG 906 54.75 MECLDAALKPCFRNDISLQPQLSVHDNASDDFFVDQLLDLSNHDEFVQPDHFPDHDNPSLSLSVSGHQFHHTSFVSDLPSLPSTELTVPAEDLADLEWLSHFVEDSFSGFSASFPSAAAVDHQPENGGSLSPLKPCFKTPVPVKARSKRTRTGGRVWCLASSSLTESSSSSTTSSSSSSPTSPWFFISERFEPEVPVSKKRRRKSPAEKFRVAFGAQAPRRCSHCGVQKTPQWRTGPLGAKTLCNACGVRFKSGRLLPEYRPACSPTFSSELHSNHHRKVLEMRRTKETAAPAEFLTSENK 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 8121845 8122842 - Hsped.07g06880.1 Hepe07g0688 574083
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe07g0688 301 CDD ZnF_GATA 221 269 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe07g0688 301 ProSitePatterns GATA-type zinc finger domain. 222 247 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe07g0688 301 Pfam GATA zinc finger 222 256 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe07g0688 301 Gene3D - 215 289 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Hepe07g0688 301 FunFam GATA transcription factor 213 297 - -
Hepe07g0688 301 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 215 278 - -
Hepe07g0688 301 PANTHER GATA TRANSCRIPTION FACTOR 31 288 IPR051140 GO:0005634(PANTHER)|GO:0030154(PANTHER)
Hepe07g0688 301 SMART GATA_3 216 270 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe07g0688 301 ProSiteProfiles GATA-type zinc finger domain profile. 216 252 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe07g0688 301 PIRSF Txn_fac_GATA_plant 15 301 IPR016679 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0045893(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe07g0688 Hepe-Chr7:8121845 Hepe08g0974 Hepe-Chr8:9152296 5.29e-56 dispersed
Hepe04g1516 Hepe-Chr4:70712151 Hepe07g0688 Hepe-Chr7:8121845 1.72e-08 wgd
Hepe04g1570 Hepe-Chr4:71201897 Hepe07g0688 Hepe-Chr7:8121845 5.35e-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55929 PF00320 GATA 3.70E-16 CL0167 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe07g0688 - - - 0.0