Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Hepe07g0731 | ATGTCGCTTAAAAGTTTTGTTAGAGAGCTGCGAGAGATAAAAGATGGAATTGGGAGCATTTCGAAGCGAGGAGAAGAAGGAAGTAGTAGGCATTGGCGAAACCGCGCGATGTCGCATATTGCACCCGATCAAGAACCTTCGCCATTAGAGCTAATTCAGCAAGGTCGATGGGCAAATCTGCCCCCTGAATTACTTTTAGACATCATCCGGAGAGTGGAAGAGAGTGAAACCTCATGGCCTGCTCGAGCTGTAGTCGTTTTTTGTGCTTCAGTTTGTAGGTCTTGGAGGGCCATTACTAAGGAGATTATCAGAACTCCTGAGCAATGTGGAAAGCTCACATTTCCAATCTCACTAAAGCAGGTATTGATTTTTTTTTTAATCCCTTTTCCCCTCTCTTTTTGGCTAAATCCTTTCATATTCTGTTTCTCTCTGATTTTCTTTTTACAATTGAAGCCTGGCCCCCGGGAGTCTCCATTTCAGTGCTTTATCAGAAGGGATAGAGCAACTTCGACCTACCTCCTGTACTTTGGTTTGGTTCCTTCGGAGGACGAAAAGGATAAATTGTTGTTAGCAGCCAAGAGGATCAGAAGAGCAGCCGGTACTGACTTTATCATATCTTTAGTAGCTGATGATTTTTCTCGAGCGAGTAGTACCTATGTTGGTAAATTAAGGTCTAATTTCCTGGGTACGAAGTTCTCTATTTATGACAGCCAACCTCCTTGTGACCCTGCAGCTCGGCAAAATAGTCGATCAAGCCGTAGATTTCGCTCTAAGCAAGTCTCTCCTAGAGTACCTGCATGTAACTACAGTGTAGGTACAATTTCTTATGAACTTAATGTTCTTCGCACTAGAGGTCCTCGGAGGATGCAGTGCACCATGCAAACCATTCCAGTCTCTTCAATTCAGGAGGGAGGCACTGCCCCAACACCTACATCATTCACATATTCTATCGATGACCAAATTTCTTCCATGTCCGATTCTATGAGAAAGGATTCAGCCAAGGACTTTGGCTCAAAGACCCTATCAGAACCAGCAGTTCAGGGTTCGGATGAATCCTTGATGCTTAAAAACAAGGCACCGAGATGGCACGAGCAGCTGCAGTGCTGGTGCCTAAATTTCAGAGGACGTGTGACTGTGGCCTCTGTCAAGAACTTCCAACTCGTCGCAGCTGTTGATCAATCTCATAATGTTTCAGTGGAAGAGCAAGAGAAGGTAATTCTCCAGTTCGGAAAAATTGGAAAAGACATCTTCACCATGGATTACCACTATCCGCTCTCTGCATTCCAAGCCTTTGCAATCTGCTTGAGCAGCTTCGACACGAAGCCAGCCTGCGAATGA | 1338 | 44.92 | MSLKSFVRELREIKDGIGSISKRGEEGSSRHWRNRAMSHIAPDQEPSPLELIQQGRWANLPPELLLDIIRRVEESETSWPARAVVVFCASVCRSWRAITKEIIRTPEQCGKLTFPISLKQVLIFFLIPFPLSFWLNPFIFCFSLIFFLQLKPGPRESPFQCFIRRDRATSTYLLYFGLVPSEDEKDKLLLAAKRIRRAAGTDFIISLVADDFSRASSTYVGKLRSNFLGTKFSIYDSQPPCDPAARQNSRSSRRFRSKQVSPRVPACNYSVGTISYELNVLRTRGPRRMQCTMQTIPVSSIQEGGTAPTPTSFTYSIDDQISSMSDSMRKDSAKDFGSKTLSEPAVQGSDESLMLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVDQSHNVSVEEQEKVILQFGKIGKDIFTMDYHYPLSAFQAFAICLSSFDTKPACE | 445 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 8734820 | 8738120 | + | Hsped.07g07310.1 | Hepe07g0731 | 574126 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Hepe07g0731 | 445 | ProSitePatterns | Tub family signature 1. | 373 | 386 | IPR018066 | - | |
Hepe07g0731 | 445 | Pfam | F-box-like | 57 | 100 | IPR001810 | GO:0005515(InterPro) | |
Hepe07g0731 | 445 | CDD | F-box_AtTLP-like | 57 | 101 | - | - | |
Hepe07g0731 | 445 | SUPERFAMILY | F-box domain | 51 | 101 | IPR036047 | GO:0005515(InterPro) | |
Hepe07g0731 | 445 | Gene3D | - | 51 | 104 | - | - | |
Hepe07g0731 | 445 | Gene3D | Tubby Protein; Chain A | 145 | 445 | IPR025659 | - | |
Hepe07g0731 | 445 | PANTHER | TUBBY-RELATED | 44 | 444 | - | - | |
Hepe07g0731 | 445 | ProSitePatterns | Tub family signature 2. | 430 | 445 | IPR018066 | - | |
Hepe07g0731 | 445 | SUPERFAMILY | Tubby C-terminal domain-like | 148 | 445 | IPR025659 | - | |
Hepe07g0731 | 445 | PRINTS | Tubby superfamily signature | 203 | 219 | IPR000007 | - | |
Hepe07g0731 | 445 | PRINTS | Tubby superfamily signature | 219 | 243 | IPR000007 | - | |
Hepe07g0731 | 445 | PRINTS | Tubby superfamily signature | 355 | 372 | IPR000007 | - | |
Hepe07g0731 | 445 | PRINTS | Tubby superfamily signature | 268 | 295 | IPR000007 | - | |
Hepe07g0731 | 445 | PRINTS | Tubby superfamily signature | 373 | 389 | IPR000007 | - | |
Hepe07g0731 | 445 | PRINTS | Tubby superfamily signature | 423 | 445 | IPR000007 | - | |
Hepe07g0731 | 445 | PRINTS | Tubby superfamily signature | 402 | 421 | IPR000007 | - | |
Hepe07g0731 | 445 | MobiDBLite | consensus disorder prediction | 239 | 259 | - | - | |
Hepe07g0731 | 445 | Pfam | Tub family | 151 | 440 | IPR000007 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Hepe01g1672 | Hepe-Chr1:81900023 | Hepe07g0731 | Hepe-Chr7:8734820 | 5.01e-179 | dispersed | |
Hepe07g0731 | Hepe-Chr7:8734820 | Hepe10g1960 | Hepe-Chr10:56548708 | 7.37e-140 | dispersed | |
Hepe07g0479 | Hepe-Chr7:4924730 | Hepe07g0731 | Hepe-Chr7:8734820 | 3.40e-150 | transposed | |
Hepe04g1521 | Hepe-Chr4:70741379 | Hepe07g0731 | Hepe-Chr7:8734820 | 3.24e-214 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
55936 | PF01167 | Tub | 6.40E-106 | CL0395 | Hepe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Hepe07g0731 | K19600 | - | csv:101205595 | 745.347 |