Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe07g0731 ATGTCGCTTAAAAGTTTTGTTAGAGAGCTGCGAGAGATAAAAGATGGAATTGGGAGCATTTCGAAGCGAGGAGAAGAAGGAAGTAGTAGGCATTGGCGAAACCGCGCGATGTCGCATATTGCACCCGATCAAGAACCTTCGCCATTAGAGCTAATTCAGCAAGGTCGATGGGCAAATCTGCCCCCTGAATTACTTTTAGACATCATCCGGAGAGTGGAAGAGAGTGAAACCTCATGGCCTGCTCGAGCTGTAGTCGTTTTTTGTGCTTCAGTTTGTAGGTCTTGGAGGGCCATTACTAAGGAGATTATCAGAACTCCTGAGCAATGTGGAAAGCTCACATTTCCAATCTCACTAAAGCAGGTATTGATTTTTTTTTTAATCCCTTTTCCCCTCTCTTTTTGGCTAAATCCTTTCATATTCTGTTTCTCTCTGATTTTCTTTTTACAATTGAAGCCTGGCCCCCGGGAGTCTCCATTTCAGTGCTTTATCAGAAGGGATAGAGCAACTTCGACCTACCTCCTGTACTTTGGTTTGGTTCCTTCGGAGGACGAAAAGGATAAATTGTTGTTAGCAGCCAAGAGGATCAGAAGAGCAGCCGGTACTGACTTTATCATATCTTTAGTAGCTGATGATTTTTCTCGAGCGAGTAGTACCTATGTTGGTAAATTAAGGTCTAATTTCCTGGGTACGAAGTTCTCTATTTATGACAGCCAACCTCCTTGTGACCCTGCAGCTCGGCAAAATAGTCGATCAAGCCGTAGATTTCGCTCTAAGCAAGTCTCTCCTAGAGTACCTGCATGTAACTACAGTGTAGGTACAATTTCTTATGAACTTAATGTTCTTCGCACTAGAGGTCCTCGGAGGATGCAGTGCACCATGCAAACCATTCCAGTCTCTTCAATTCAGGAGGGAGGCACTGCCCCAACACCTACATCATTCACATATTCTATCGATGACCAAATTTCTTCCATGTCCGATTCTATGAGAAAGGATTCAGCCAAGGACTTTGGCTCAAAGACCCTATCAGAACCAGCAGTTCAGGGTTCGGATGAATCCTTGATGCTTAAAAACAAGGCACCGAGATGGCACGAGCAGCTGCAGTGCTGGTGCCTAAATTTCAGAGGACGTGTGACTGTGGCCTCTGTCAAGAACTTCCAACTCGTCGCAGCTGTTGATCAATCTCATAATGTTTCAGTGGAAGAGCAAGAGAAGGTAATTCTCCAGTTCGGAAAAATTGGAAAAGACATCTTCACCATGGATTACCACTATCCGCTCTCTGCATTCCAAGCCTTTGCAATCTGCTTGAGCAGCTTCGACACGAAGCCAGCCTGCGAATGA 1338 44.92 MSLKSFVRELREIKDGIGSISKRGEEGSSRHWRNRAMSHIAPDQEPSPLELIQQGRWANLPPELLLDIIRRVEESETSWPARAVVVFCASVCRSWRAITKEIIRTPEQCGKLTFPISLKQVLIFFLIPFPLSFWLNPFIFCFSLIFFLQLKPGPRESPFQCFIRRDRATSTYLLYFGLVPSEDEKDKLLLAAKRIRRAAGTDFIISLVADDFSRASSTYVGKLRSNFLGTKFSIYDSQPPCDPAARQNSRSSRRFRSKQVSPRVPACNYSVGTISYELNVLRTRGPRRMQCTMQTIPVSSIQEGGTAPTPTSFTYSIDDQISSMSDSMRKDSAKDFGSKTLSEPAVQGSDESLMLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVDQSHNVSVEEQEKVILQFGKIGKDIFTMDYHYPLSAFQAFAICLSSFDTKPACE 445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 8734820 8738120 + Hsped.07g07310.1 Hepe07g0731 574126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe07g0731 445 ProSitePatterns Tub family signature 1. 373 386 IPR018066 -
Hepe07g0731 445 Pfam F-box-like 57 100 IPR001810 GO:0005515(InterPro)
Hepe07g0731 445 CDD F-box_AtTLP-like 57 101 - -
Hepe07g0731 445 SUPERFAMILY F-box domain 51 101 IPR036047 GO:0005515(InterPro)
Hepe07g0731 445 Gene3D - 51 104 - -
Hepe07g0731 445 Gene3D Tubby Protein; Chain A 145 445 IPR025659 -
Hepe07g0731 445 PANTHER TUBBY-RELATED 44 444 - -
Hepe07g0731 445 ProSitePatterns Tub family signature 2. 430 445 IPR018066 -
Hepe07g0731 445 SUPERFAMILY Tubby C-terminal domain-like 148 445 IPR025659 -
Hepe07g0731 445 PRINTS Tubby superfamily signature 203 219 IPR000007 -
Hepe07g0731 445 PRINTS Tubby superfamily signature 219 243 IPR000007 -
Hepe07g0731 445 PRINTS Tubby superfamily signature 355 372 IPR000007 -
Hepe07g0731 445 PRINTS Tubby superfamily signature 268 295 IPR000007 -
Hepe07g0731 445 PRINTS Tubby superfamily signature 373 389 IPR000007 -
Hepe07g0731 445 PRINTS Tubby superfamily signature 423 445 IPR000007 -
Hepe07g0731 445 PRINTS Tubby superfamily signature 402 421 IPR000007 -
Hepe07g0731 445 MobiDBLite consensus disorder prediction 239 259 - -
Hepe07g0731 445 Pfam Tub family 151 440 IPR000007 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1672 Hepe-Chr1:81900023 Hepe07g0731 Hepe-Chr7:8734820 5.01e-179 dispersed
Hepe07g0731 Hepe-Chr7:8734820 Hepe10g1960 Hepe-Chr10:56548708 7.37e-140 dispersed
Hepe07g0479 Hepe-Chr7:4924730 Hepe07g0731 Hepe-Chr7:8734820 3.40e-150 transposed
Hepe04g1521 Hepe-Chr4:70741379 Hepe07g0731 Hepe-Chr7:8734820 3.24e-214 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55936 PF01167 Tub 6.40E-106 CL0395 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe07g0731 K19600 - csv:101205595 745.347