Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe07g0834 ATGACGACGATTCCAAGTTTGCTGCCTATGCTTGCTCTGTTCTCGCTGAGAGCAGGTACTTCGAATTCGAATTCCGTGCCGCAAAAGCCGACCGAGAACCACAAGTTTAAGATTCTTCCAGTTCCAGCTTCATCATGGGGACTAATGCCATCGGAGAATCCAGATGGGTATTGCTTAATCAAAGAGAAAATGGCACAAGCACTTCGGTACATTAAAGAATCGTCTGACCAGCATGTACTAGCTCAGGTTTGGGCGCCTGTAAAAAGTGGTGGCAAGTTTGTACTTACAACTTCTGGGCAACCGTTTGTGCTTGATTCACAGAGCAATGGACTTCATCAGTATAGGATGGCGTCTTTGACGTTTATGTTTTCTTTGGATGCCGACCCGGATGGATGTCTTGGGCTCCCTGGTCGTGTTTTTCAACAAAAACTGCCAGAATGGACTCCAAATGTGCAGTATTATTCAAGCAAGGAGTATCCACGACTTAGTCATGCTCTTCACTACAATGTTCAGGGAACATTAGCTTTGCCTGTTTTCGAGCCTTCCGGGCAGTCTTGTCTAGGTGTTCTCGAGCTAATCATGACCTCACCGAAGATCAATTATGCTCCTGAGGTGGACAAAGTCTGTAAAGCTCTTGAGGCTGTGAATCTAAAAAGTTCAGAGATTTTGGATCATCCGACTATCCAGATTTGCAATGAAGGCCGACAGAATGCATTGGCTGAAATTTTGGAGGTACTCACAGTTGTATGCGAAACTCATAAATTACCATTGGCTCAAACGTGGGTTCCGTGCAGGCACCGAAACGTGCTCGCCTACGGTGGAGGATTGAAGAAAAGCTGTACTAGCTTCGATGGTAGTTGCATGGGACGGGTGTGTATGTCGGCAACTGAAGTAGCATTCTATGTTATTGATGCTCACATGTGGGGTTTTAGAGAGGCATGTTTAGAACACCATTTACAAAAGGGTCAAGGAGTGTCCGGGAGAGCATTTTCGTCCCACAGCTCATGTTTTTGTGGAGACATCACACAATTCTGCAAGACCGAATACCCTTTGGTACACTATGCACTCATGTTCGGATTAAAGAGCTGTTTTTCGATCTGCTTACGGAGCACGTTTACCGGAGATGATGAGTACATCCTAGAGTTTTTTCTACCACCGAGCATTGTTGGTTATGAGGAACAAAAGACATTGTTGGGGGCGTTAATGGCAACAATGAAGCAGCATTTCTACACTCTCAAAGTTGCTTCTGGAGTCAACTTTAAGGAGGAGGAAGGAGTTGTTGAGATGATTCAAGCATCGAGAAATGGAGGGTTCGAGTCTAGACATGAATATATACAAATTCCCCGAGCCATGAAATTGGCACCTGAGTCTGATGCCATGCCGATGTCGAATGCGAGAGAAGAAACATTGCAACAGCAATCTTCTTTAATGGTGGGGGTTCATGATACCCCGAAGGACGAAAACAATAGTACCACTGGGGACGGGGACAGGGACAGGGACGGGGAAAGGCACAACCAGGCTGTTCCTTGTTCGCAGAATAAGGAAGTAAAAAAGACGTCTGAAAGGAAGCGTGGAAAAGCCGAGAAATCAATTAGTCTGGAGGTTCTACAGCAATATTTTGCTGGCAGTCTTAAGGATGCTGCTAAAAGCCTTGGGGTTTGTCCGACAACAATGAAACGTATCTGTAGGCAACACGGGATCTCACGGTGGCCATCTCGGAAGATCAACAAGGTGAATCGCTCACTTTCAAAGCTAAAGCGTGTGATTGAATCTGTTCAAGGGGCGGAAGGAGCATTCGGAATATCTTCTCTGGCTACAAGTCCACTTTCTGTTGCTGTTAGTCCAAGTTCTCATCCGGAAGGGTGTAATCAGCAACCATCTGATCCTCAACATAAAGAAACAAACACCTCAGAAGCACAGACAAATGACACACGAGCAGAGACTAGGAGGAGTGGATCACGAGAAGAGAGCACCGGGACGCCCACTTCTCATGGTTCATGCCAAGGTAGTCCTGCAAATGACAGTGCACTAGCAAACAATCCCATTTCTATTTCTCACCAACAACAATGTGTAAGAAGAGAATCTCCCGACCCACCATTCCATGTCCATCCGATACTGGATATATCTGCTTGTCCAATACAGGATACGCTCGTGATGGTAGACCCCCCCGAGGAACCATTTGGAGGAATGCTGATTGAGGATGCAGGAAGTTCTAAGGACTTAAAAAATCTTTGCGCTGCTGATGCAATTCTTGACGATCAAGTACCCGAATTTGAATTTTGTTGGCCCAACCCTTCAGATATAGCTCTCAGACAACCCATGGACTCTGTTTGTCACACACTCCCTCATCATATATCAGTTGTAAGGCAAGAGCCAAGGAGGATGACTATCAAGGCCACTTATAAGGAAGATATTATTCGGTTTCGAATTTCCTTGAGTTCTGGTATTGTCGAGTTAAGAGAAGAAGTCGCCAAGAGATTGAAATTGGAGGTCGGTACGTTCGATATCAAATACATGGACGACGATCGTGAATGGGTTCTTATTGCCTGTGATGCAGACTTGCAAGAGTGTGTGGATATCTCCAAGTCATCAGGTAGCAATATAATTAGATTGTTGGTTCATGATATAACTGTCACTCTTGGCAGTTCTTGTGAGAGTACCGGGGAGTGA 2670 45.43 MTTIPSLLPMLALFSLRAGTSNSNSVPQKPTENHKFKILPVPASSWGLMPSENPDGYCLIKEKMAQALRYIKESSDQHVLAQVWAPVKSGGKFVLTTSGQPFVLDSQSNGLHQYRMASLTFMFSLDADPDGCLGLPGRVFQQKLPEWTPNVQYYSSKEYPRLSHALHYNVQGTLALPVFEPSGQSCLGVLELIMTSPKINYAPEVDKVCKALEAVNLKSSEILDHPTIQICNEGRQNALAEILEVLTVVCETHKLPLAQTWVPCRHRNVLAYGGGLKKSCTSFDGSCMGRVCMSATEVAFYVIDAHMWGFREACLEHHLQKGQGVSGRAFSSHSSCFCGDITQFCKTEYPLVHYALMFGLKSCFSICLRSTFTGDDEYILEFFLPPSIVGYEEQKTLLGALMATMKQHFYTLKVASGVNFKEEEGVVEMIQASRNGGFESRHEYIQIPRAMKLAPESDAMPMSNAREETLQQQSSLMVGVHDTPKDENNSTTGDGDRDRDGERHNQAVPCSQNKEVKKTSERKRGKAEKSISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGAEGAFGISSLATSPLSVAVSPSSHPEGCNQQPSDPQHKETNTSEAQTNDTRAETRRSGSREESTGTPTSHGSCQGSPANDSALANNPISISHQQQCVRRESPDPPFHVHPILDISACPIQDTLVMVDPPEEPFGGMLIEDAGSSKDLKNLCAADAILDDQVPEFEFCWPNPSDIALRQPMDSVCHTLPHHISVVRQEPRRMTIKATYKEDIIRFRISLSSGIVELREEVAKRLKLEVGTFDIKYMDDDREWVLIACDADLQECVDISKSSGSNIIRLLVHDITVTLGSSCESTGE 889
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 10478407 10482017 + Hsped.07g08340.1 Hepe07g0834 574229

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe07g0834 889 ProSiteProfiles PB1 domain profile. 794 876 IPR053793 -
Hepe07g0834 889 Pfam PB1 domain 795 875 IPR000270 GO:0005515(InterPro)
Hepe07g0834 889 ProSiteProfiles RWP-RK domain profile. 517 598 IPR003035 -
Hepe07g0834 889 PANTHER PROTEIN NLP8 37 888 IPR045012 GO:0003700(InterPro)
Hepe07g0834 889 CDD PB1_NLP 795 875 IPR034891 -
Hepe07g0834 889 Gene3D - 792 875 - -
Hepe07g0834 889 MobiDBLite consensus disorder prediction 478 528 - -
Hepe07g0834 889 MobiDBLite consensus disorder prediction 655 679 - -
Hepe07g0834 889 MobiDBLite consensus disorder prediction 610 679 - -
Hepe07g0834 889 MobiDBLite consensus disorder prediction 610 642 - -
Hepe07g0834 889 SUPERFAMILY CAD & PB1 domains 783 876 - -
Hepe07g0834 889 MobiDBLite consensus disorder prediction 487 505 - -
Hepe07g0834 889 FunFam RWP-RK domain-containing protein 791 875 - -
Hepe07g0834 889 Pfam RWP-RK domain 530 577 IPR003035 -
Hepe07g0834 889 SMART PB1_new 794 876 IPR000270 GO:0005515(InterPro)
Hepe07g0834 889 Pfam NLP protein GAF domain 229 412 IPR055081 -
Hepe07g0834 889 Pfam NLP protein GAF domain 79 212 IPR055081 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe07g0834 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe05g1115 Hepe-Chr5:55120279 Hepe07g0834 Hepe-Chr7:10478407 6.98e-129 dispersed
Hepe07g0834 Hepe-Chr7:10478407 Hepe01g2340 Hepe-Chr1:87941046 4.85e-135 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe07g0834 . 115 889 NLP Transcription Factor Family AT1G64530 54.0 1.9e-219 759.2
Hepe07g0834 . 194 889 NLP Transcription Factor Family AT4G24020 55.7 1.9e-195 679.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003291 3 3 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 7 2 2 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55949 PF00564 PB1 3.40E-19 CL0072 Hepe TF