Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe07g0878 ATGAATGTGGCGCCAATTCCAGGGCCGGGCGACATCGGAGCGCAGGCGGTGGCGATCAGAATCAGCGGCGACCAGGCGGCGTTTTGGAGCTGCGGATTCTTCGGCGCTCAAGACACTCTCCACGATGACCGCGGCCGCCATTACTTCAAGGATTGCTACATCCAAGGCTCCATCGATTTCATCTTCGGCAATGGAAAATCCTTCTACGAGAGTTGCCAGTTGATTTCGATGGCGAATCCGGTGCCGCAAGGATCGAAGTTCGTGAACGGAGCGGTGACGGCGCACGGCAGAGCCTCCGCCGACGAGAACTCTGGATATGCGTTTGTTAATTGCAGCATCGGCGGCACCGGCAGAGTGTGGCTCGGCCGCGCGTGGCGGCCGTTCTCTCGCGTCGTCTTCGCCAACACCGTCATGACGGATATAATTGCGTCGGAGGGGTGGAATGACTTTAATGACCCTACAAGAGATCAGACAATATTCTATGGAGAGTACAACTGCAGTGGAACAGGAGCCAATATGAGCGCAAGGGCTCCCTTTGTTCAGAGGCTGAATGATACTCAAGTTTCTCCTTTCCTTAACTTGACCTTCATTGATGCAGACCAATGGCTACAACCCTATTGA 621 54.75 MNVAPIPGPGDIGAQAVAIRISGDQAAFWSCGFFGAQDTLHDDRGRHYFKDCYIQGSIDFIFGNGKSFYESCQLISMANPVPQGSKFVNGAVTAHGRASADENSGYAFVNCSIGGTGRVWLGRAWRPFSRVVFANTVMTDIIASEGWNDFNDPTRDQTIFYGEYNCSGTGANMSARAPFVQRLNDTQVSPFLNLTFIDADQWLQPY 206
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 11264453 11268929 - Hsped.07g08780.1 Hepe07g0878 574273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe07g0878 206 SUPERFAMILY Pectin lyase-like 12 205 IPR011050 -
Hepe07g0878 206 Pfam Pectinesterase 11 199 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Hepe07g0878 206 Gene3D - 2 206 IPR012334 -
Hepe07g0878 206 ProSitePatterns Pectinesterase signature 2. 54 63 IPR033131 -
Hepe07g0878 206 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 9 204 - GO:0030599(PANTHER)|GO:0045490(PANTHER)|GO:0052689(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe07g0878 Hepe-Chr7:11264453 Hepe09g0821 Hepe-Chr9:8035990 2.75e-75 dispersed
Hepe07g0878 Hepe-Chr7:11264453 Hepe10g0628 Hepe-Chr10:7799371 1.24e-58 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe07g0878 - - - 0.0