Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe07g0957 ATGAAGATTCAGTGCAATGTCTGCGAGATGGCTGAGGCGACCGTACTCTGTTGTGCTGATGAGGCGGCGCTGTGCTGGGCCTGCGACGAGAAGATTCATGCTGCCAACAAGCTCGCAAGCAAACACCAGAGAGTTCCTCTCTCTGGTTCTTCATCCCAGATGCCCAAATGTGACATATGTCAGGAAGCTAGTGGCTACATCTTCTGTTTAGAGGATCGGGCATTACTTTGCAGAAAGTGTGATGTTGCTATACACACAGCAAATACTTATGTAACTGGTCATCAGCGCTTTCTGCTTACTGGTGTGAAAGTGGCACTTGAGCCAACTGACCCTGTTGCTTGTTCTTCCATGGCTAAGTCATATTCTAGAGAGAAATCTATTGAGACGAAAGTTAGACCATTGCCTGAAAGGGAATTCTCGATGCCTTCTCCTGGCGAACTCAGCAGAACTCTGCATATACAAGGCGAATCTGAGGACTTCGTGGCAAGTAAAATGTTTCTTACCGGAGATTCTGTTTCTGGTGGCTTTTCACAATGGCAAATGGATGAACTTATTAATTTGACCGGATTCAATCATAATTATGGGTATACGGATAACGGATCATCTAAGGCTGATAGTGGTAAACTTGGGGATTCTGATTCATCACCAGTTTTGAGAGCTGGTGATGTCGAACTGGACGATGACGATGAGTGCTCGGGTCAGGTTCCAGAGGCTTCCTGGACTGTGCCTCAGATTCCCTCCCCACCCACAGCATCTGGCTTATACTGGCCAAGAAGTTACCATAATTCTATGGATGGTGCTGTTTTTGTTCCTGACATCTCCTGTTCTTCAGAAAAGGTTCGACATTGCTCACATAACGGTACATTCTCGAAACGACGGAGGCAGTTCTAG 891 46.46 MKIQCNVCEMAEATVLCCADEAALCWACDEKIHAANKLASKHQRVPLSGSSSQMPKCDICQEASGYIFCLEDRALLCRKCDVAIHTANTYVTGHQRFLLTGVKVALEPTDPVACSSMAKSYSREKSIETKVRPLPEREFSMPSPGELSRTLHIQGESEDFVASKMFLTGDSVSGGFSQWQMDELINLTGFNHNYGYTDNGSSKADSGKLGDSDSSPVLRAGDVELDDDDECSGQVPEASWTVPQIPSPPTASGLYWPRSYHNSMDGAVFVPDISCSSEKVRHCSHNGTFSKRRRQF 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 12812874 12816488 + Hsped.07g09570.1 Hepe07g0957 574352

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe07g0957 296 CDD Bbox1_BBX-like 56 99 IPR049808 -
Hepe07g0957 296 MobiDBLite consensus disorder prediction 201 246 - -
Hepe07g0957 296 FunFam B-box zinc finger protein 22 1 93 - -
Hepe07g0957 296 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 276 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
Hepe07g0957 296 CDD Bbox1_BBX-like 5 47 IPR049808 -
Hepe07g0957 296 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270(InterPro)
Hepe07g0957 296 Gene3D Classic Zinc Finger 1 92 - -
Hepe07g0957 296 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Hepe07g0957 296 Pfam B-box zinc finger 3 47 IPR000315 GO:0008270(InterPro)
Hepe07g0957 296 Pfam B-box zinc finger 53 96 IPR000315 GO:0008270(InterPro)
Hepe07g0957 296 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
Hepe07g0957 296 SMART bboxneu5 52 99 IPR000315 GO:0008270(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe07g0957 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g0478 Hepe-Chr2:4666861 Hepe07g0957 Hepe-Chr7:12812874 7.33e-36 dispersed
Hepe03g1068 Hepe-Chr3:60426425 Hepe07g0957 Hepe-Chr7:12812874 2.43e-41 dispersed
Hepe07g0738 Hepe-Chr7:8820933 Hepe07g0957 Hepe-Chr7:12812874 4.76e-24 dispersed
Hepe07g0957 Hepe-Chr7:12812874 Hepe10g0125 Hepe-Chr10:1269043 5.34e-34 dispersed
Hepe07g0957 Hepe-Chr7:12812874 Hepe01g1643 Hepe-Chr1:81637092 1.88e-36 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe09g0005 . 1 377 Orphan Transcription Factor Family AT5G61850 69.2 3.3e-129 458.8
Hepe03g1068 . 1 168 Orphan Transcription Factor Family AT1G06040 66.7 8.9e-60 226.9
Hepe07g0957 . 1 109 Orphan Transcription Factor Family AT1G06040 67.9 1.1e-38 156.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005660 1 1 3 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55959 PF00643 zf-B_box 3.60E-07 No_clan Hepe TF