Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe07g0976 ATGTCTCTTCGCAGATCGTTTCTCTCTCGGAGGTTTTCCTCCAAGTCTTCTTACAGAGATCCGAACGGTGGTGTGGCCGGAGGAATTCTTCCACTTTCCGCCTCCGACTTGGAAGATGACTCCGCTCTCCCCGCCGGGAGTGGCGCCGATCGGATGCAGGCTGAATCTTCTTGGTCCTCCATGCTCCCCGAGCTTCTCCGGGAGATTATTCAACGGGTTGAGGCTTCCGAGGACCGCTGGCCTAATCGCCAGAACGTTGTTTCCTGTGCTTGTGTTTGTAAGCGTTGGCGGGATATTACTAAGGAGATCTCTACAGCCTCTCCTCACTCCGGGATAATCACTTTCCCTTCTTGCCTCAAACAGCCTGGACCAAGTGATCTTCCACATCAGTGTCTTATAAAAAGGAACAAGAAGACTTCAACGTTTTACCTTTATCTCGCCCTCACACCATCATTTACAGATAAGGGAAAATTCCTCTTAGCCGCCCGGAGATATAGGCATGGAGCTCATACTGAGTATATAATATCTCTTGATGCTGAAGACTTATCCCAAGGAAGCAATGCTTATGTGGGGAAGTTGAGCTCCGATTTTCTTGGCACCAATTTTACAATTTATGATAGCCAACCACCCCATAATGGTGCAAAGCCATCAGTCAGTAAATCAACCCGCCGCTTCGCAAGCAAGCAAATTAGCCCACAAGTTTCTGCTGGTAACTTTGAGGTTGGACAAGTCTCTTACAAATTTAATCTTTTGAAATCAAGAGGCCCAAGGAGAATGATATGCTCTCTAAAGTGCCCGGTATCAGAAGACGCTGGCACTAGCAAACCTTGTGAGAACTCGAACATGAAGAAATCCGAGCCTTTTTCTTCATCTGGGTTGACAATCTTAAGAAACAAGGCTCCTAGGTGGCATGAGCACCTGCAATGTTGGTGCTTGAATTTTCACGGTCGGGTGACAGTAGCATCAGTTAAAAACTTTCAACTTGTCGCTACTGTTGACCATAGCCAGCCAGGAGGTAAAGGCGATGAAGAAACAGTGCTCCTACAGTTCGGAAAGGTAGGCGATGATACCTTTACTATGGATTATAGGCAGCCATTATCAGCTTTCCAGGCATTCGCCATTTGCCTTACGAGCTTTGGCACGAAGTTGGCGTGCGAGTAG 1161 47.55 MSLRRSFLSRRFSSKSSYRDPNGGVAGGILPLSASDLEDDSALPAGSGADRMQAESSWSSMLPELLREIIQRVEASEDRWPNRQNVVSCACVCKRWRDITKEISTASPHSGIITFPSCLKQPGPSDLPHQCLIKRNKKTSTFYLYLALTPSFTDKGKFLLAARRYRHGAHTEYIISLDAEDLSQGSNAYVGKLSSDFLGTNFTIYDSQPPHNGAKPSVSKSTRRFASKQISPQVSAGNFEVGQVSYKFNLLKSRGPRRMICSLKCPVSEDAGTSKPCENSNMKKSEPFSSSGLTILRNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDHSQPGGKGDEETVLLQFGKVGDDTFTMDYRQPLSAFQAFAICLTSFGTKLACE 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 13300191 13304174 - Hsped.07g09760.1 Hepe07g0976 574371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe07g0976 386 SUPERFAMILY F-box domain 52 101 IPR036047 GO:0005515(InterPro)
Hepe07g0976 386 ProSitePatterns Tub family signature 2. 371 386 IPR018066 -
Hepe07g0976 386 PANTHER TUBBY-RELATED 50 385 - -
Hepe07g0976 386 Pfam F-box domain 58 101 IPR001810 GO:0005515(InterPro)
Hepe07g0976 386 ProSitePatterns Tub family signature 1. 314 327 IPR018066 -
Hepe07g0976 386 PRINTS Tubby superfamily signature 238 265 IPR000007 -
Hepe07g0976 386 PRINTS Tubby superfamily signature 314 330 IPR000007 -
Hepe07g0976 386 PRINTS Tubby superfamily signature 189 213 IPR000007 -
Hepe07g0976 386 PRINTS Tubby superfamily signature 173 189 IPR000007 -
Hepe07g0976 386 PRINTS Tubby superfamily signature 296 313 IPR000007 -
Hepe07g0976 386 PRINTS Tubby superfamily signature 364 386 IPR000007 -
Hepe07g0976 386 PRINTS Tubby superfamily signature 343 362 IPR000007 -
Hepe07g0976 386 Gene3D Tubby Protein; Chain A 113 386 IPR025659 -
Hepe07g0976 386 Pfam Tub family 119 381 IPR000007 -
Hepe07g0976 386 SUPERFAMILY Tubby C-terminal domain-like 109 386 IPR025659 -
Hepe07g0976 386 CDD F-box_AtTLP-like 58 102 - -
Hepe07g0976 386 Gene3D - 52 105 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g1679 Hepe-Chr3:73621763 Hepe07g0976 Hepe-Chr7:13300191 4.58e-12 dispersed
Hepe07g0976 Hepe-Chr7:13300191 Hepe10g1960 Hepe-Chr10:56548708 1.10e-115 dispersed
Hepe07g0976 Hepe-Chr7:13300191 Hepe03g0129 Hepe-Chr3:1546333 1.10e-128 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55961 PF01167 Tub 5.90E-102 CL0395 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe07g0976 K19600 - csv:101211968 659.833