Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe07g1016 ATGAACCTGAAAGGCAAGATTTCACAATCACTTGCTGGTTTGGATCAGTTAATTTGGCTTAACCTATCATACAATCAGCTTGAAGGTGTGCTGCCAACAGAATTCTCAAGCTTCAAGCAGCTCCAGGTTTTGGATATAAGCTACAATAAGCTGTCAGGATCAGTCACCAATGCTACTTCAGGGTTGAAATCTGTTCATATTCTGAATATTTCCAGCAATTCATTCATTGGGGATTTCCCCCAGATTATGGGATTTCAGAATCTTGTTGCTTTCAACATAAGTAACAATTCTTTCACAGGTCAGTTTTCTTCACAGATTTGCAATTCCTCCAACGTGATTCAGGTTGTTGATATATCATCAAACCAAATTTCCGGCGATCTTCAAGGTATGGACAATTGCAGCAAATCTCTCAAACATTTTCGTGCAGACAGTAACTCACTTACAGGCCATCTTCCAGATTCGTTGTATTCATTATCATCTTTGGAGTACTTATCAATCCCTGAGAACAGCTTCCTTGGCCAGTTAAGCATGGAACTAAAATTACAGGAGTTAGTTGCACATTCTAACTTGTTCTCTGGAATATTGCCTTCATCTCTGTCGTTCTGCTCAAAGCTCAGAGTGTTTGATCTTAGAAATAATTCTTTAAATGGTACTGTCGATCTCAATTTTTCTAGGCTACCAGATCTTCAAATGCTTGATCTAGCCTCTAATCACTTTTCTGGGCCTCTACCAAATTCTCTATCTGATTGCCATGAATTGAAAACTCTTAGCCTTGCCAAAAACAAGTTAACCGGTCAAATTCCTCGAGATTACGCTAAGCTTTCCTCTCTGTCCTTTCTATCTTTGTCGAACAACAGTATAACAAACTTGGGTGGTGCATTATCTGTTCTACAGAATTGCAAAAACCTGACTGTTCTTATTCTTACAAAGAACTTTCGTAATGAGGAAATTCCACAGAGTGAAACTGTTTTCAACAACTTGATGCTTTTGGCTTTTGGTAACTGTGGTCTGAGAGGAACTATTCCAGGTTGGTTACTAGGTTGCAAGAAATTAAGCATCCTTGATTTGTCTTGGAATCACTTAAATGGAAGTATCCCTGCTTGGATTGGTCAGCTGGAGAATTTGTTTTATTTGGACTTATCCAACAATTCTCTGACAGGAGAAATCCCGAAAAGCTTGACACAGATGAAAGCACTAATTTCCAAAAACTGCAGCTTGTCCAGTTCGACATCATCTGCTGGAATCCCCCTTTTTGTCAAACGAAATCAAAGTTCAAGTGGTTTGCAATACAACCAAGCGTCAAGCTTTCCACCATCTATTTACTTGAGCTACAACAGAATAAATGGAACTATTTTGCCAGAAATTGGTAGATTAAAATGGCTGCATGTCTTGGATTTGAGTCGGAATAATATTACTGGATCCATCCCGAACACCATATCAGAGATGGAGAACTTGGAAACATTAGATTTGTCGAATAATGATCTTTATGGACGGATTCCTCCATCATTCAACAAGCTCACATTCTTATCGAAATTTAGCGTGGCAAATAATCACTTGGAGGGACCAATTCCAAATGGAGGACAGTTCTTAAGCTTTCCCAGCTCAAGCTTCGAGGGTAATGCAGGACTTTGTAGGGAAATTGACAATCCTTGCCGTGTTGTTGATGGTTTAGGAACAAAACCCGAATCCTCCACTGACTCGAAGAGAAAAGTTGGTAGAAAGATCATTCTTTGTCTTACCATCAGTGCAGCGGCAGCAATCCTCCTGCTCCTTACAGTGGTTCTACTCAAAATATCCAGGAAAGATGTTGGAGATCGAAATAGCAGTTTTGATGAGGAATTTGACAGGCCCGACAGGTTATCTGGAGCTCTTGGATCGTCAAAGTTGGTGCTCTTTCAGAATTCAGAATGCAGGGATCTTACAGTTGCAGAGTTGTTAAAAGCTACCTGCAATTTCAACCAAGCAAACATAATCGGCTGTGGTGGATTTGGCCTGGTTTACAAAGCCAGCCTTCCCAATGGTTCAAAAGCTGCAGTCAAGAGGCTTACAGGAGATTGTGGCCAGATGGAACGGGAATTCCACGCTGAAGTAGAAGCTCTTTCTCGAGCGCAGCATAAGAACCTTGTTTCCCTTCAAGGTTACTGCAAACATGGAAATGACAGGCTATTAATTTACTCCTACATGGAAAATGGAAGTTTGGACTATTGGCTTCACGAGATTGTTGATGATGATTCAATACTAAAATGGGAAGCAAGGCTCAAAATCGCACAGGGTGCTGCTCATGGGTTGGCTTACTTGCATAAGGAATGTCAGCCAAACATAATTCACCGAGATGTAAAATCGAGCAACATACTTCTAGATGACAGATTTGAGGCTCATTTAGCTGATTTTGGTCTTTCAAGATTACTCCGGCCGTATGACACTCATGTTACCACAGACTTGGTTGGGACTTTGGGTTATATTCCTCCTGAATACAGCCAGACATTAATTGCAACCTGCAGGGGCGATGTTTACAGTTTTGGCGTTGTTCTTCTTGAGCTTCTTACTGGTCGGAGGCCTGTAGAGGTATGCAAAGGTAAAGCCTGCAGGGATCTGGTGTCTTGGGTGATTCAGAAGAAATCAGAAAAGAGAGAAGAGGAAATTATTGATCCTGCAATTTGGGATACAAATAGCAAAAAACAGATTTTAGAAGTTCTTGATATTACTTGTAAATGCATAGACCAAGATCCAAGGAAGAGACCGACTATTGAAGAAGTTTCTTCATGGCTAGATGGTGTTACGTTGTAG 2787 40.65 MNLKGKISQSLAGLDQLIWLNLSYNQLEGVLPTEFSSFKQLQVLDISYNKLSGSVTNATSGLKSVHILNISSNSFIGDFPQIMGFQNLVAFNISNNSFTGQFSSQICNSSNVIQVVDISSNQISGDLQGMDNCSKSLKHFRADSNSLTGHLPDSLYSLSSLEYLSIPENSFLGQLSMELKLQELVAHSNLFSGILPSSLSFCSKLRVFDLRNNSLNGTVDLNFSRLPDLQMLDLASNHFSGPLPNSLSDCHELKTLSLAKNKLTGQIPRDYAKLSSLSFLSLSNNSITNLGGALSVLQNCKNLTVLILTKNFRNEEIPQSETVFNNLMLLAFGNCGLRGTIPGWLLGCKKLSILDLSWNHLNGSIPAWIGQLENLFYLDLSNNSLTGEIPKSLTQMKALISKNCSLSSSTSSAGIPLFVKRNQSSSGLQYNQASSFPPSIYLSYNRINGTILPEIGRLKWLHVLDLSRNNITGSIPNTISEMENLETLDLSNNDLYGRIPPSFNKLTFLSKFSVANNHLEGPIPNGGQFLSFPSSSFEGNAGLCREIDNPCRVVDGLGTKPESSTDSKRKVGRKIILCLTISAAAAILLLLTVVLLKISRKDVGDRNSSFDEEFDRPDRLSGALGSSKLVLFQNSECRDLTVAELLKATCNFNQANIIGCGGFGLVYKASLPNGSKAAVKRLTGDCGQMEREFHAEVEALSRAQHKNLVSLQGYCKHGNDRLLIYSYMENGSLDYWLHEIVDDDSILKWEARLKIAQGAAHGLAYLHKECQPNIIHRDVKSSNILLDDRFEAHLADFGLSRLLRPYDTHVTTDLVGTLGYIPPEYSQTLIATCRGDVYSFGVVLLELLTGRRPVEVCKGKACRDLVSWVIQKKSEKREEEIIDPAIWDTNSKKQILEVLDITCKCIDQDPRKRPTIEEVSSWLDGVTL 928
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 14323610 14326480 - Hsped.07g10160.1 Hepe07g1016 574411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe07g1016 928 ProSitePatterns Protein kinases ATP-binding region signature. 658 680 IPR017441 GO:0005524(InterPro)
Hepe07g1016 928 Gene3D Transferase(Phosphotransferase) domain 1 728 927 - -
Hepe07g1016 928 ProSiteProfiles Leucine-rich repeat profile. 276 298 IPR001611 GO:0005515(InterPro)
Hepe07g1016 928 SMART LRR_typ_2 458 481 IPR003591 -
Hepe07g1016 928 SMART LRR_typ_2 226 250 IPR003591 -
Hepe07g1016 928 SMART LRR_typ_2 372 396 IPR003591 -
Hepe07g1016 928 SMART LRR_typ_2 14 37 IPR003591 -
Hepe07g1016 928 SMART LRR_typ_2 274 297 IPR003591 -
Hepe07g1016 928 SMART LRR_typ_2 482 505 IPR003591 -
Hepe07g1016 928 SMART LRR_typ_2 38 61 IPR003591 -
Hepe07g1016 928 ProSitePatterns Serine/Threonine protein kinases active-site signature. 774 786 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe07g1016 928 FunFam Leucine-rich repeat receptor-like protein kinase 728 928 - -
Hepe07g1016 928 Pfam Protein kinase domain 653 919 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe07g1016 928 Gene3D Ribonuclease Inhibitor 1 106 IPR032675 -
Hepe07g1016 928 Pfam Leucine rich repeat 440 495 IPR001611 GO:0005515(InterPro)
Hepe07g1016 928 Pfam Leucine rich repeat 326 385 IPR001611 GO:0005515(InterPro)
Hepe07g1016 928 Pfam Leucine rich repeat 180 239 IPR001611 GO:0005515(InterPro)
Hepe07g1016 928 Pfam Leucine rich repeat 17 74 IPR001611 GO:0005515(InterPro)
Hepe07g1016 928 PRINTS Leucine-rich repeat signature 482 495 - -
Hepe07g1016 928 PRINTS Leucine-rich repeat signature 375 388 - -
Hepe07g1016 928 Gene3D Ribonuclease Inhibitor 113 290 IPR032675 -
Hepe07g1016 928 Gene3D Ribonuclease Inhibitor 291 554 IPR032675 -
Hepe07g1016 928 SUPERFAMILY Protein kinase-like (PK-like) 633 923 IPR011009 -
Hepe07g1016 928 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 136 926 IPR050647 -
Hepe07g1016 928 ProSiteProfiles Protein kinase domain profile. 652 923 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe07g1016 928 Gene3D Phosphorylase Kinase; domain 1 621 727 - -
Hepe07g1016 928 FunFam Phytosulfokine receptor 1 615 727 - -
Hepe07g1016 928 SUPERFAMILY L domain-like 2 173 - -
Hepe07g1016 928 FunFam Tyrosine-sulfated glycopeptide receptor 1 223 555 - -
Hepe07g1016 928 SUPERFAMILY RNI-like 180 525 - -
Hepe07g1016 928 CDD STKc_IRAK 658 919 - -
Hepe07g1016 928 SMART serkin_6 652 923 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe07g0174 Hepe-Chr7:1547408 Hepe07g1016 Hepe-Chr7:14323610 3.53e-81 dispersed
Hepe07g1016 Hepe-Chr7:14323610 Hepe08g2232 Hepe-Chr8:62070809 7.96e-78 dispersed
Hepe10g1528 Hepe-Chr10:52008438 Hepe07g1016 Hepe-Chr7:14323610 9.75e-47 dispersed
Hepe03g1689 Hepe-Chr3:73713346 Hepe07g1016 Hepe-Chr7:14323610 5.32e-140 transposed
Hepe01g0190 Hepe-Chr1:30929819 Hepe07g1016 Hepe-Chr7:14323610 8.03e-158 wgd
Hepe02g2485 Hepe-Chr2:71389676 Hepe07g1016 Hepe-Chr7:14323610 9.99e-56 wgd
Hepe04g0285 Hepe-Chr4:48007645 Hepe07g1016 Hepe-Chr7:14323610 4.73e-44 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72939 PF00069 Pkinase 2.80E-44 CL0016 Hepe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe07g1016 K27626 - rcu:8265318 1226.85