Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe07g1047 ATGGTGGTTAGTTTTGGTGGGTTCTTTGTCGTCCATGGGGATGGTGGTGGTTGGTTTGATGCTCATGCAACTTTCTATGGAGCTGATCAAAACCCTACTAGTCTCGGAGGAGCATGTGGTTACGACAATACATTCCATGCCGGATTCGGAATAAACACGGCGGCGGTGAGCGGTGCACTTTTCAAAGGAGGAGAGGCCTGCGGTGCTTGCTTCCTAGTAATTTGCAACTACAACCTGGACCCCAAGTGGTGCCTCCGCCGCGGCGCCGTTGCCGTCACCGCCACAAACTTCTGCCCCTCCAATAACAACGGCGGCTGGTGCGACCCCCCTCGCTCCCACTTCGACATGTCGTCACCTGCTTTTCTTACCATTGCTCGTCAAGCCAACGAAGGCATCATTCCTGTCCTTTACAAGAGGGTGAGTTGTAGAAGGGAGGGAGGGGTTCGGTTCACGTTGAGAGGGCAATCAAACTTCAACATGGTGATGATATCGAACGTTGGTGGCAGTGGCGACGTGAAGGCTGCATGGGTGAAGAGGTCGAGGACGAGGACATGGACGCCCATGCACCGGAATTGGGGGGCGAATTGGCAAGCCAATGTCGACCTCCGAAACCAAAGAATGTCGTTTAAGCTCACTCTAGTTGATGGTACGACATTGGAGTTTGTTAATGTGGTTCCTTCCTCTTGGAGGTTCGGCCAGACATTTTCTTCTATGATTCAGTTCTCCTAG 729 52.67 MVVSFGGFFVVHGDGGGWFDAHATFYGADQNPTSLGGACGYDNTFHAGFGINTAAVSGALFKGGEACGACFLVICNYNLDPKWCLRRGAVAVTATNFCPSNNNGGWCDPPRSHFDMSSPAFLTIARQANEGIIPVLYKRVSCRREGGVRFTLRGQSNFNMVMISNVGGSGDVKAAWVKRSRTRTWTPMHRNWGANWQANVDLRNQRMSFKLTLVDGTTLEFVNVVPSSWRFGQTFSSMIQFS 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 15740363 15743457 + Hsped.07g10470.1 Hepe07g1047 574442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe07g1047 242 Gene3D - 10 143 IPR036908 -
Hepe07g1047 242 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 36 147 IPR007112 -
Hepe07g1047 242 PRINTS Expansin signature 48 62 IPR002963 GO:0009664(InterPro)
Hepe07g1047 242 PRINTS Expansin signature 90 100 IPR002963 GO:0009664(InterPro)
Hepe07g1047 242 PRINTS Expansin signature 77 88 IPR002963 GO:0009664(InterPro)
Hepe07g1047 242 PRINTS Expansin signature 158 179 IPR002963 GO:0009664(InterPro)
Hepe07g1047 242 PRINTS Expansin signature 194 215 IPR002963 GO:0009664(InterPro)
Hepe07g1047 242 PRINTS Expansin signature 104 121 IPR002963 GO:0009664(InterPro)
Hepe07g1047 242 PRINTS Expansin signature 146 158 IPR002963 GO:0009664(InterPro)
Hepe07g1047 242 PRINTS Expansin signature 223 239 IPR002963 GO:0009664(InterPro)
Hepe07g1047 242 SUPERFAMILY Barwin-like endoglucanases 11 165 IPR036908 -
Hepe07g1047 242 Gene3D - 147 242 IPR036749 -
Hepe07g1047 242 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 157 237 IPR007117 -
Hepe07g1047 242 Pfam Lytic transglycolase 53 137 IPR009009 -
Hepe07g1047 242 Pfam Expansin C-terminal domain 148 226 IPR007117 -
Hepe07g1047 242 PRINTS Expansin/Lol pI family signature 35 53 IPR007118 GO:0005576(InterPro)
Hepe07g1047 242 PRINTS Expansin/Lol pI family signature 130 146 IPR007118 GO:0005576(InterPro)
Hepe07g1047 242 PRINTS Expansin/Lol pI family signature 185 199 IPR007118 GO:0005576(InterPro)
Hepe07g1047 242 PRINTS Expansin/Lol pI family signature 17 32 IPR007118 GO:0005576(InterPro)
Hepe07g1047 242 PRINTS Expansin/Lol pI family signature 57 75 IPR007118 GO:0005576(InterPro)
Hepe07g1047 242 PRINTS Expansin/Lol pI family signature 223 237 IPR007118 GO:0005576(InterPro)
Hepe07g1047 242 PANTHER EXPANSIN-A15 16 236 IPR002963 GO:0009664(InterPro)
Hepe07g1047 242 CDD DPBB_EXPA_N 17 142 - -
Hepe07g1047 242 SMART dpbb_1 53 137 IPR007112 -
Hepe07g1047 242 SUPERFAMILY PHL pollen allergen 144 237 IPR036749 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe07g1047 Hepe-Chr7:15740363 Hepe10g0175 Hepe-Chr10:1772782 4.47e-92 dispersed
Hepe07g1047 Hepe-Chr7:15740363 Hepe09g0111 Hepe-Chr9:892173 9.63e-87 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe07g1047 - - - 0.0