Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe07g1115 ATGTTTGTCTTCAAGGACAAAGATTACGAGAGAAAAGAGACAGAGGCAGAAAAATTTAAGGAAAATAAAATGAGTGATAAAGTTTCAGCCGCTCCAAGCTCTTCGGAGGTGACTCGACCGTCTGCTCAATTTGAAGCTAGTGTTTGGACAGACTATTTTCTTTCCTATCATTCTCTTCCTCCGGAAGAAACCAACCAGTCGATGGAGAAGCACATAGAAGAATTGAAAGAACAAGTAAAAAGTGAGCTGATTTCTCGGACCAAGGATCAAGCTGACCAATTGAGATTAATCGATTCAATCCAACGCCTCGGCGTTTCTTATCATTTCGAAACTGAGATCGACAAAATACTTCAACAAATCCACGAGATCAATTCTCAAAATGATGATGATCTCCACACCACGACTCTGAGTTTTAGACTTCTCAGACAACAAGGCTATAAAATATCATCTGAAATGTTTAATAAGTTTGGAGGTCAATGGGAAAGTTTAGATGGTAGCAATATAGAAGAACTCTTGAGTTTGTACGAAGCATCGCAACTGAGGATGCGAGGAGAGGCGGTACTGGACGAAGCGTTCCGTTTCACCATTGCTCAATTTGAAACCATTGTCGGAGACTCCACCGCCGATCCAACCGTTGCAGCGGAAGTTCGCCGTGCTTTGAAGTGGCCGATCTACAAGAACCTGCCGAGGCTCGAAGCTAGACACTACATTGGTTTGTACAGCGAAAAGCCATGGAGGAATGAGGCTTTACTTAAGTTTGCAAAGATGGAATTCAACCAAGTGCAAAAGCTTCATCAGAAAGAGATTGCTTACATCTCGAAGTGGTGGGAAGATTATGGTTTTGCAGAAAAGCTATCGTTTGCAAGGAACAGGATTGTGGAGGGTTATTTTTTTGCACTTGGGATATTCTTTGAACCCCAATTTTCAACTGCTAGAGTTATTATGACCAAAATCATTGGTATTGGGTCAATGTTAGATGACATTTATGATGTTTATGGCACACTTGAAGAACTTAAACTCCTCACCCTTGCACTTGAAAGATGGGACAAGAGCGAAACAGACCAACTCCCAAATTATATGAAGATGTATTACGAAGCTTTACTTGATGTTTTTGAAGAAATTGAACAAGAAATGAGCGAGCAGAAAGCTACACCATCTTGCATCCATTACATGAAAGAAGCGACAAAGGAACTTGGAAGGGTGTTTCTGGTAGAAGCAAAATGGTGCAATGAAGGATACACACCAACGGTTGAGGAATATTTGGATATTGCTTTGATATCTTTTGGCCACAAATTGCTTATGGTGACTGCTCTGTTGGGAATGGGAGATTTGGCCACACAACAGGCTGTTCAATGGGTCGCCTCCATGCCTAATATTCTCAAGGCCTCCACTGTTATTTGTAGGCTCATGAACGACATCGTTTCACACAAGTTTGAGCAAGAAAGAGGTCATGTGGCCTCCGCCATTGAATGCTACATGAAGGAGAATCATGTGTTAGAATGCGACGCCCTAAATGCATTGCAGGAACAAATTGTTGATTCTTGGAAGGATATGGTTCAGAATTGTCTTGCCACCACAGAGGTTCCAAGGGCTGTTCTTACGAGAGTTTTGAACCTCACAAGACTATTCAATGTCATTTACAAGGATGGAGATGGCTATACACAATCTCAAGGATCAACCAAAGCCCATATCAAGTCCTTGCTTGTTGATTCTAAGTTGAAAAGGCAGAAGGAGAGGAGAAGTCAGTCGCTCGCCGCCGCCGCCAGCCTCGCACCGCCGCCGTTGCACGCTCCGTCGTTGCCAACCTCCGTCGCCGCCAGCCCACTCCGTTGCCTCAATCCCGCACCGTCGCAAGTCTCCGTCGCCGCCAGCCCCGCACCGCCGCACGACAGCTTCCGTCGCGCCCGTTCCGCTGCACGCCAACGCCGGCTCGCTCGCTCGGCTCGCCTCTATCAAGTTTTTTTCTTACCTTACTGA 1977 45.02 MFVFKDKDYERKETEAEKFKENKMSDKVSAAPSSSEVTRPSAQFEASVWTDYFLSYHSLPPEETNQSMEKHIEELKEQVKSELISRTKDQADQLRLIDSIQRLGVSYHFETEIDKILQQIHEINSQNDDDLHTTTLSFRLLRQQGYKISSEMFNKFGGQWESLDGSNIEELLSLYEASQLRMRGEAVLDEAFRFTIAQFETIVGDSTADPTVAAEVRRALKWPIYKNLPRLEARHYIGLYSEKPWRNEALLKFAKMEFNQVQKLHQKEIAYISKWWEDYGFAEKLSFARNRIVEGYFFALGIFFEPQFSTARVIMTKIIGIGSMLDDIYDVYGTLEELKLLTLALERWDKSETDQLPNYMKMYYEALLDVFEEIEQEMSEQKATPSCIHYMKEATKELGRVFLVEAKWCNEGYTPTVEEYLDIALISFGHKLLMVTALLGMGDLATQQAVQWVASMPNILKASTVICRLMNDIVSHKFEQERGHVASAIECYMKENHVLECDALNALQEQIVDSWKDMVQNCLATTEVPRAVLTRVLNLTRLFNVIYKDGDGYTQSQGSTKAHIKSLLVDSKLKRQKERRSQSLAAAASLAPPPLHAPSLPTSVAASPLRCLNPAPSQVSVAASPAPPHDSFRRARSAARQRRLARSARLYQVFFLPY 658
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 19573266 19577919 + Hsped.07g11150.1 Hepe07g1115 574510

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe07g1115 658 PANTHER OS04G0344100 PROTEIN-RELATED 45 553 - -
Hepe07g1115 658 Gene3D Farnesyl Diphosphate Synthase 47 562 IPR008949 -
Hepe07g1115 658 Coils Coil 364 384 - -
Hepe07g1115 658 Pfam Terpene synthase family, metal binding domain 278 517 IPR005630 GO:0000287(InterPro)|GO:0010333(InterPro)|GO:0016829(InterPro)
Hepe07g1115 658 FunFam Isoprene synthase, chloroplastic 239 562 - -
Hepe07g1115 658 SFLD Terpene Cyclase Like 1 C Terminal Domain 247 572 IPR034741 -
Hepe07g1115 658 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 47 243 IPR008930 -
Hepe07g1115 658 SFLD Isoprenoid Synthase Type I 247 572 - -
Hepe07g1115 658 Pfam Terpene synthase, N-terminal domain 48 220 IPR001906 GO:0010333(InterPro)|GO:0016829(InterPro)
Hepe07g1115 658 Gene3D - 88 246 IPR036965 GO:0010333(InterPro)|GO:0016829(InterPro)
Hepe07g1115 658 Coils Coil 65 85 - -
Hepe07g1115 658 CDD Terpene_cyclase_plant_C1 39 570 IPR044814 GO:0010333(InterPro)|GO:0016102(InterPro)
Hepe07g1115 658 SUPERFAMILY Terpenoid synthases 246 571 IPR008949 -
Hepe07g1115 658 MobiDBLite consensus disorder prediction 1 25 - -
Hepe07g1115 658 MobiDBLite consensus disorder prediction 1 40 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe07g1115 K15803 - - csv:101211540 842.417
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe06g1226 Hepe-Chr6:61940155 Hepe07g1115 Hepe-Chr7:19573266 2.59e-171 dispersed
Hepe06g1227 Hepe-Chr6:61949993 Hepe07g1115 Hepe-Chr7:19573266 8.63e-173 dispersed
Hepe07g1115 Hepe-Chr7:19573266 Hepe07g1117 Hepe-Chr7:19660331 0.0 dispersed
Hepe07g1115 Hepe-Chr7:19573266 Hepe07g1116 Hepe-Chr7:19616143 6.36e-63 tandem
Hepe10g0762 Hepe-Chr10:13675793 Hepe07g1115 Hepe-Chr7:19573266 6.40e-99 wgd
Hepe06g0117 Hepe-Chr6:3935202 Hepe07g1115 Hepe-Chr7:19573266 3.63e-111 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g396 . . . . . . . . Cmo16g00930 . . . . . . . . . . . . . . . Cla10g00589 Cam10g0577 Cec10g0608 Cco10g0584 Clacu10g0608 Cmu10g1421 Cre10g0823 . . . . . Csa03g00578 . Cme06g02696 . . . . . . . . . . . . . . . . . Bhi11g00695 Tan01g1629 . . Hepe07g1115 . . . . . . . . . Lsi05g00662 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013849 0 2 0 0 0 1 0 1 1 1 1 1 0 1 1 0 1 0 0 1 1 2 3 1 1 2 1 0 2 0 25