Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Hepe07g1125 | ATGGCGATACAAACCACATTGGAAAAAGCTGTTGCGGCTCAAAACTACGCGGCCCGATTCGGTGCCAGTTGCAAGACCACACGTCAGAGAGCCGCGTGGGCCGACTGCTTCAACCTCTATACCGACACTGTTTTTCAATTAAACCGCACCTTCCAATGCCTCCTCGGCAAAACCCACCACCCTTGTACGGATTTCGATGCACAAACTTGGCTCAGTTCTGCACTCACCAACATCGATATGTGCCTCTCCGGCGCGGCGGATCTCAACGTGGCGGATTTTATAACTCCCATCAAATGTGAGAATGTTTCGAAGATGATTAGCAATTGTTTGGCTATTAATGAGAGATTCTTAGAGGAAGAGGTTAAAAGTGGAAGAACAAGAGTACAATATCAAAATGGGTTTCCGGGATGGGTTTCGAGTGGTGATCGGAAATTGTTGGAGTCGGCAAGAGTGAGGGCTAATTTGATGGTGGCCAAAGATGGGTCTGGAAATTTCCGTTCGGTTCAGGCGGCGATCAACGCTGCAGGGAGGAGGCGAGGGAGGAGTCGATTTGTAATTTACGTAAAGCGAGGAGTTTATAGAGAAAATATTGAAATTCAAAATGATAATGGGAATTTAATGTTAGTCGGAGATGGGATGAGATTTAGTGTGATTACTGGTGGAAGAAGCGTCGCCGCCGGCTACACCACCTTTAGTTCTGCAACTGCAGGTATCCAAGGTCCAGGCTTCATAGCTCGAGACATAGCCTTTGTAAACACCGCGGGTCCACGAATGGGGCAAGCCGTGGCACTGCGGTCATCATCGGACCTATCAGTGTTCCACCGGTGCAGCTTTCAAGGCTACCAAGACACTCTAATGGTGCTCTCACAAAGACAATTCTACAAGCAATGTTACGTTTACGGTACAATCGACTTCATTTTCGGCAACGCGGCAGTTGTTTTACAAAACTGCTTGATTTACGTAAGAAGGCCCTTAAAGGGGCAAGTGAACGTCATCACGGCCCAAGGTCGAGAGGATCCTTTTCAGAACAGCGGAATTTCAATCCACAACTCTCAAATACGGGCCGCCGCGGATTTGCAACCCATGATTGGCTCGGTCAAGACGTACTTGGGTCGGCCCTGGAAGAAGTACTCGCGGGTCGTGATTATGAGGAGCTACGTTGACAGCTTGGTCAGCCCAATGGGCTGGTTGGCGTGGCAAAGTAGTAAATTTGCTCAAGATACGTTGTATTATGGGGAGTATCATAATTTTGGGCCTAGAGCTTCCACCCGGTATAGAGTGAGATGGCCCGGTTTTCATGTCATTAAAAGTCCAAATGTGGCTTCTAAGTTCACCGTCGGGAGACTCATCGCCGGCCAGACTTGGCTGCCGGCCACCGGAATTCCCTTCAAGCTTGGCCTCTGA | 1404 | 49.07 | MAIQTTLEKAVAAQNYAARFGASCKTTRQRAAWADCFNLYTDTVFQLNRTFQCLLGKTHHPCTDFDAQTWLSSALTNIDMCLSGAADLNVADFITPIKCENVSKMISNCLAINERFLEEEVKSGRTRVQYQNGFPGWVSSGDRKLLESARVRANLMVAKDGSGNFRSVQAAINAAGRRRGRSRFVIYVKRGVYRENIEIQNDNGNLMLVGDGMRFSVITGGRSVAAGYTTFSSATAGIQGPGFIARDIAFVNTAGPRMGQAVALRSSSDLSVFHRCSFQGYQDTLMVLSQRQFYKQCYVYGTIDFIFGNAAVVLQNCLIYVRRPLKGQVNVITAQGREDPFQNSGISIHNSQIRAAADLQPMIGSVKTYLGRPWKKYSRVVIMRSYVDSLVSPMGWLAWQSSKFAQDTLYYGEYHNFGPRASTRYRVRWPGFHVIKSPNVASKFTVGRLIAGQTWLPATGIPFKLGL | 467 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 20386608 | 20388296 | - | Hsped.07g11250.1 | Hepe07g1125 | 574520 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Hepe07g1125 | 467 | SMART | PMEI_2 | 1 | 112 | IPR006501 | GO:0004857(InterPro) | |
| Hepe07g1125 | 467 | Pfam | Pectinesterase | 155 | 452 | IPR000070 | GO:0030599(InterPro)|GO:0042545(InterPro) | |
| Hepe07g1125 | 467 | SUPERFAMILY | Pectin lyase-like | 151 | 466 | IPR011050 | - | |
| Hepe07g1125 | 467 | SUPERFAMILY | Plant invertase/pectin methylesterase inhibitor | 1 | 116 | IPR035513 | - | |
| Hepe07g1125 | 467 | FunFam | Pectinesterase | 148 | 467 | - | - | |
| Hepe07g1125 | 467 | Gene3D | Invertase/pectin methylesterase inhibitor family protein | 1 | 116 | IPR035513 | - | |
| Hepe07g1125 | 467 | NCBIfam | pectinesterase inhibitor domain | 2 | 114 | IPR006501 | GO:0004857(InterPro) | |
| Hepe07g1125 | 467 | ProSitePatterns | Pectinesterase signature 1. | 180 | 199 | IPR018040 | - | |
| Hepe07g1125 | 467 | Pfam | Plant invertase/pectin methylesterase inhibitor | 1 | 112 | IPR006501 | GO:0004857(InterPro) | |
| Hepe07g1125 | 467 | ProSitePatterns | Pectinesterase signature 2. | 299 | 308 | IPR033131 | - | |
| Hepe07g1125 | 467 | CDD | PMEI-like_3 | 1 | 116 | - | - | |
| Hepe07g1125 | 467 | Gene3D | - | 148 | 467 | IPR012334 | - | |
| Hepe07g1125 | 467 | PANTHER | PECTINESTERASE | 3 | 458 | - | GO:0030599(PANTHER)|GO:0046910(PANTHER) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Hepe06g1367 | Hepe-Chr6:63939918 | Hepe07g1125 | Hepe-Chr7:20386608 | 1.17e-185 | dispersed | |
| Hepe07g0246 | Hepe-Chr7:2340813 | Hepe07g1125 | Hepe-Chr7:20386608 | 8.75e-190 | dispersed | |
| Hepe07g1125 | Hepe-Chr7:20386608 | Hepe09g1678 | Hepe-Chr9:50373634 | 2.91e-118 | dispersed | |
| Hepe01g0038 | Hepe-Chr1:5517320 | Hepe07g1125 | Hepe-Chr7:20386608 | 1.93e-101 | wgd | |
| Hepe07g1125 | Hepe-Chr7:20386608 | Hepe09g1677 | Hepe-Chr9:50296711 | 1.80e-101 | wgd | |
| Hepe07g1125 | Hepe-Chr7:20386608 | HepeContig66g0115 | Hepe-ChrContig66:7762778 | 3.97e-89 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Hepe07g1125 | K01051 | - | csv:101213944 | 771.541 |